Basic Information
Locus ID:
Ag3G00422
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Glycosyl transferases group 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 10613829 | 10615704 | - | Ag3G00422 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.68 | 54,537.04 Da | 33.90 | 82.84 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03801 | GT4_PimA-like | 83 | 469 | 4.20705E-56 | - |
| Pfam | PF13439 | Glycosyltransferase Family 4 | 98 | 276 | 4.1E-17 | IPR028098 |
| Pfam | PF00534 | Glycosyl transferases group 1 | 301 | 438 | 1.8E-17 | IPR001296 |
| SUPERFAMILY | SSF53756 | UDP-Glycosyltransferase/glycogen phosphorylase | 95 | 469 | 3.1E-52 | - |
| Gene3D | G3DSA:3.40.50.2000 | Glycogen Phosphorylase B; | 282 | 447 | 1.7E-27 | - |
| Gene3D | G3DSA:3.40.50.2000 | Glycogen Phosphorylase B; | 83 | 281 | 1.4E-15 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G73160.1 | UDP-Glycosyltransferase superfamily protein. | 0 |
| RefSeq | XP_017246514.1 | PREDICTED: uncharacterized protein LOC108218104 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A165Z1D1 | Glyco_trans_4-like_N domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_013142 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 2.407453 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.199221 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.311693 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.217157 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.080905 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.03783 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0.919437 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0.844955 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0.968917 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0.727188 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0.632795 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0.748845 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 1.199805 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 1.77643 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 1.402583 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0.21086 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.57275 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.421383 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 1.319065 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0.044796 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0.391044 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0.844481 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.493119 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.559449 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0.446859 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.094015 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.834599 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.499815 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 1.056538 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.729458 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.847513 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.355232 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.076593 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 1.479741 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.93259 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.396722 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.049483 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.05717 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.050674 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.048209 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.11564 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0.619676 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 1.28374 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0.51026 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg37989, jg4647 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1767 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah004702 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g108430 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24311, Sbi_jg8142 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11880 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010857 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl52498, Sgl57771 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000004046, gene:ENSEOMG00000024037 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0000820, CQ.Regalona.r1.5BG0000970 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30062500, pistato.v30162060 |
| Apiaceae | Apium graveolens | 3 | Ag1G01091, Ag3G00422, Ag6G02154 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G001140, COCNU_06G002820 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103704107, gene-LOC103724357 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.2582.V1.1, AsparagusV1_02.1059.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G33668, Ftri16G24002 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G73160.1, AT4G19460.1, AT5G59070.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10013459m.g.v1.0, Thhalv10019571m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp5g28120.v2.2, Sp6g20910.v2.2, Sp7g18080.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB02g071430.2N, BniB02g071440.2N, BniB03g039140.2N ... |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno04g18230, gene.Cymno06g02840 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g34640, gene.Thate02g25920 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-1093, nbisL1-mrna-11438 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG05.1523, evm.TU.LG05.479, evm.TU.LG09.1193 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00007609, Pov_00016237 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.2560, BH02.2655, CH02.3874 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0026870, gene-QOZ80_1BG0077120 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0276460.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_054284 |
| Poaceae | Oryza coarctata | 1 | Oco02G016310 |
| Poaceae | Oryza sativa | 3 | LOC_Os01g46430.1, LOC_Os08g34000.1, LOC_Os10g18310.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G214700 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0604982 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr03G012400, Chr08G012670 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G400600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG035370, gene_TRIDC3BG039740 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G236400.1.cds1, TraesCS3B02G263300.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb158150_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-25928, nbis-gene-29060 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g10775, Zma_g8339 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG10.546, evm.TU.LG17.557 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g39990, gene.Posoc03g23270 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_13_RagTag.862, evm.TU.Scaffold_14_RagTag.787 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-11137, nbisL1-mrna-17672, nbisL1-mrna-30157 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-5857, nbisL1-mrna-6425 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-16237, nbisL1-mrna-17120 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000015l.205, add.evm.TU.utg000025l.9 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015438 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-18493, nbisL1-mrna-23163 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20922, nbisL1-mrna-8976 |
| Salicaceae | Populus euphratica | 6 | populus_peu03320, populus_peu17777, populus_peu34166 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132602430, gene-LOC132635499, gene-LOC132638587 |
| Solanaceae | Solanum chilense | 3 | SOLCI000407300, SOLCI003061500, SOLCI005177100 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107006859, gene-LOC107020305, gene-LOC107027325 |
| Tamaricaceae | Reaumuria soongarica | 3 | gene_13957, gene_3617, gene_6923 |
| Tamaricaceae | Tamarix chinensis | 3 | TC01G4617, TC07G0125, TC11G1124 |
| Zosteraceae | Zostera marina | 3 | Zosma01g41070.v3.1, Zosma06g08030.v3.1, Zosma06g08040.v3.1 |