Basic Information
Locus ID:
Ag3G00412
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
F-box LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 10197530 | 10198664 | + | Ag3G00412 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.14 | 32,478.31 Da | 39.31 | 91.92 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF52047 | RNI-like | 46 | 230 | 2.43E-7 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 3 | 277 | 4.1E-15 | IPR032675 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_017245807.1 | PREDICTED: uncharacterized protein LOC108217489 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A165Z1M8 | F-box/LRR-repeat protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_013132 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.866373 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.47547 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 2.025652 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 1.801018 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 1.705104 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1.802705 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.807679 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.91259 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 20.300779 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 15.435332 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 13.691173 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 8.151556 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 9.512443 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 6.094034 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 28.969095 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 13.626026 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 8.624803 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 2.526605 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 4.659842 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 9.067367 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 5.283151 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0.821447 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 1.294419 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 1.706228 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 1.576131 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 1.779316 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.914498 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.229776 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0.622995 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.305265 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.200579 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.090682 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 10.406899 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 8.614468 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 19.418884 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.155726 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.242844 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.233495 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.724152 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 1.434892 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.195722 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 40.975067 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 30.415512 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.259393 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 2.659709 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 13.563771 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 2.369329 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 18.748745 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 7.248139 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 17.96921 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg33990 |
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_14770, gene_14772, gene_7618 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000027950 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30163150, pistato.v30163280 |
| Apiaceae | Apium graveolens | 12 | Ag10G01784, Ag3G00412, Ag3G00413, Ag3G01169, Ag4G01676 ... |
| Arecaceae | Cocos nucifera | 5 | COCNU_06G018500, COCNU_06G018510, COCNU_06G018520 ... |
| Arecaceae | Phoenix dactylifera | 9 | gene-LOC103696496, gene-LOC103709792, gene-LOC103709805 ... |
| Asparagaceae | Asparagus officinalis | 4 | AsparagusV1_03.603.V1.1, AsparagusV1_03.604.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri6G23199 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G48880.1, AT4G11580.1 |
| Brassicaceae | Eutrema salsugineum | 9 | Thhalv10005418m.g.v1.0, Thhalv10005421m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 5 | Sp2g23500.v2.2, Sp5g13170.v2.2, Sp5g15070.v2.2 ... |
| Brassicaceae | Brassica nigra | 12 | BniB01g019570.2N, BniB03g044870.2N, BniB05g048770.2N ... |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g02200 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g22980 |
| Nitrariaceae | Nitraria sibirica | 8 | evm.TU.LG01.2709, evm.TU.LG02.1995, evm.TU.LG02.1996 ... |
| Plantaginaceae | Plantago ovata | 1 | Pov_00040948 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.1229, AH01.1669, AH03.2205, BH01.1867, CH01.1973 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2AG0112800, gene-QOZ80_2BG0166180 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0048040.1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_011884, gene-QYE76_016614, gene-QYE76_063504 |
| Poaceae | Oryza coarctata | 5 | Oco05G018710, Oco06G019490, Oco19G007410, Oco20G007320 ... |
| Poaceae | Oryza sativa | 4 | LOC_Os03g43770.1, LOC_Os08g04550.1, LOC_Os10g35920.1 ... |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G146500, gene-BS78_04G076000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0502836 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr01G009640, Chr04G024720, Chr06G029970, Chr07G023510 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G311200, Tel5E01G599800 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC1AG026450, gene_TRIDC1BG031920 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G173500.3, TraesCS1B02G190900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb044180_P002 |
| Poaceae | Zoysia japonica | 8 | nbis-gene-12433, nbis-gene-13418, nbis-gene-20188 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g12709, Zma_g15200, Zma_g3217, Zma_g894 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g04740 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.1367, evm.TU.Scaffold_4_RagTag.132 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12666, nbisL1-mrna-29209 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-7237, nbisL1-mrna-9851 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-12937, nbisL1-mrna-2149 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000008l.81, evm.TU.utg000008l.82 ... |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000511, Maker00008977 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-1065, nbisL1-mrna-2361 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20605, nbisL1-mrna-6270 |
| Salicaceae | Populus euphratica | 6 | populus_peu00840, populus_peu26417, populus_peu29244 ... |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132606495, gene-LOC132631880, gene-LOC132631886 ... |
| Solanaceae | Solanum chilense | 5 | SOLCI000293500, SOLCI002365900, SOLCI005115700 ... |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107012666, gene-LOC107012727, gene-LOC107014731 |