Basic Information
Locus ID:
Ag3G00396
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 9861180 | 9865283 | + | Ag3G00396 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.19 | 115,675.48 Da | 31.02 | 99.25 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 471 | 520 | 1.3E-6 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 324 | 384 | 3.3E-8 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 40 | 74 | 8.8E-7 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 85 | 144 | 3.6E-10 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 580 | 639 | 5.8E-8 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 771 | 1037 | 7.5E-43 | IPR000719 |
| SUPERFAMILY | SSF52047 | RNI-like | 225 | 548 | 7.53E-55 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 51 | 266 | 2.86E-38 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 750 | 1039 | 4.24E-76 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 560 | 665 | 3.74E-21 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 735 | 845 | 7.0E-33 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 153 | 224 | 2.0E-8 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 846 | 1044 | 3.0E-58 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 296 | 679 | 4.7E-104 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 225 | 295 | 4.1E-12 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 40 | 152 | 1.0E-27 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 107 | 130 | 71.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 251 | 274 | 190.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 131 | 163 | 52.0 | - |
| SMART | SM00369 | LRR_typ_2 | 299 | 322 | 49.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 395 | 426 | 65.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 323 | 344 | 98.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 469 | 501 | 500.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 578 | 604 | 92.0 | - |
| SMART | SM00369 | LRR_typ_2 | 395 | 418 | 9.7 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 602 | 625 | 30.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 131 | 154 | 30.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 578 | 601 | 190.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 324 | 346 | 370.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 347 | 371 | 66.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 275 | 298 | 33.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 770 | 1039 | 1.5E-41 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 469 | 493 | 200.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 325 | 346 | 7.673451 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 770 | 1039 | 37.120842 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 890 | 902 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 776 | 798 | - | IPR017441 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 602 | 615 | 2.9E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 134 | 147 | 2.9E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53890.1 | phytosylfokine-alpha receptor 2. Encodes a leucine-rich repeat receptor kinase (LRR-RK) involved in the perception of phytosulfokine (PSK), which is a 5-aa tyrosine-sulfated peptide that primarily promotes cellular proliferation. | 0 |
| RefSeq | XP_017243574.1 | PREDICTED: phytosulfokine receptor 2 [Daucus carota subsp. sativus] | 0 |
| Q9FN37 | Phytosulfokine receptor 2 OS=Arabidopsis thaliana OX=3702 GN=PSKR2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A165Z240 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_013115 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 4.616905 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 3.999593 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 4.23785 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 3.005892 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 4.116258 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 5.393575 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 4.242295 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 2.303613 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 13.755419 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 12.696444 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 13.177781 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 8.398833 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 8.030051 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 6.485788 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 2.634305 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 3.529977 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 4.219118 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 2.438072 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 1.647782 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 2.653792 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 2.360082 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 7.421404 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 9.262181 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 8.278234 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 6.772611 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 3.528065 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 3.894499 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 3.190385 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 4.152242 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.280858 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.582914 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.557993 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.846439 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 3.556857 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.057622 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.461201 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.372922 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.359577 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 4.369635 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.996246 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.602616 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 2.49528 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 4.073398 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 2.182532 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 4.033438 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 2.095643 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 6.54548 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 10.167382 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 14.854726 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 12.040545 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology