halophFGD

Basic Information

Locus ID: Ag3G00385

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description:

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	9716445	9718172	+	Ag3G00385

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.75	43,103.17 Da	32.21	98.99	-0.14

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF12937	F-box-like	65	110	2.1E-6	IPR001810
SUPERFAMILY	SSF81383	F-box domain	63	131	9.16E-6	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	52	112	3.6E-6	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_017234572.1	PREDICTED: uncharacterized protein LOC108208554 [Daucus carota subsp. sativus]	0
TrEMBL	A0A175YLD8	F-box domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_028926 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	9.194059	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	7.714243	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	9.689281	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	11.944075	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	12.071392	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	13.181583	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	11.892112	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	11.306573	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	6.583376	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	9.297501	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	8.817134	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	10.474576	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	11.28595	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	8.900532	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	5.701763	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	6.274341	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	3.847555	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	8.144257	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	13.964558	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	8.941304	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	6.46103	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	6.925065	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	7.418673	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	3.742329	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	6.230056	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	10.595735	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	4.856104	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	12.595799	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	7.800817	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	9.400364		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	10.302145		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	7.500797		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	28.246742		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	13.061064		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	33.508736		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	11.492023		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	17.812761		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	12.128015		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	4.918266	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	7.694502	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	6.264355	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	11.757936	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	18.407652	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	17.170746	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	16.25786	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	8.924324	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	19.818232	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	4.860165	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	4.644896	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	5.010112	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Apiaceae	Apium graveolens	3	Ag3G00385, Ag8G01592, Ag9G02049