halophFGD

Basic Information

Locus ID: Ag3G00381

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: SPA1-related

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	9360955	9366018	+	Ag3G00381

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.23	103,328.23 Da	54.96	79.37	-0.40

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00400	WD domain, G-beta repeat	782	817	0.0023	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	653	688	3.7E-5	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	563	919	1.68E-49	IPR036322
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	78	334	1.74E-15	IPR011009
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	77	339	8.5E-23	-
Gene3D	G3DSA:2.130.10.10	-	733	922	2.8E-61	IPR015943
Gene3D	G3DSA:2.130.10.10	-	541	713	1.7E-50	IPR015943
SMART	SM00220	serkin_6	25	330	0.0061	IPR000719
SMART	SM00320	WD40_4	881	920	330.0	IPR001680
SMART	SM00320	WD40_4	736	775	0.1	IPR001680
SMART	SM00320	WD40_4	557	595	1.2	IPR001680
SMART	SM00320	WD40_4	779	817	6.8E-6	IPR001680
SMART	SM00320	WD40_4	606	645	3.1	IPR001680
SMART	SM00320	WD40_4	826	865	5.8	IPR001680
SMART	SM00320	WD40_4	648	688	8.9E-8	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	655	690	10.258324	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	786	820	12.446706	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	655	690	12.313033	IPR001680
ProSiteProfiles	PS50011	Protein kinase domain profile.	1	330	9.813956	IPR000719
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	786	820	10.363778	-
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	804	818	-	IPR019775
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	675	689	-	IPR019775
PRINTS	PR00320	G protein beta WD-40 repeat signature	675	689	1.8E-7	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	804	818	1.8E-7	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	632	646	1.8E-7	IPR020472
MobiDBLite	mobidb-lite	consensus disorder prediction	1	21	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	178	198	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	424	466	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	23	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	171	198	-	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005515 (protein binding) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K10143 (E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27])

Pathway:

map04115 (p53 signaling pathway) ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis) ko04712 (Circadian rhythm - plant) map04712 (Circadian rhythm - plant)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G15354.3	-
RefSeq	XP_017257929.1	PREDICTED: protein SPA1-RELATED 4-like isoform X1 [Daucus carota subsp. sativus]
Swiss-Prot	Q9LJR3	Protein SPA1-RELATED 3 OS=Arabidopsis thaliana OX=3702 GN=SPA3 PE=1 SV=1
TrEMBL	A0A162AE68	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_013108 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	11.492455	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	11.751484	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	10.296048	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	13.256935	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	11.746861	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	11.834792	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	6.4485	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	3.898556	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	62.921307	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	65.84803	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	75.377167	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	54.874687	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	71.874924	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	58.992569	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	28.492933	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	29.905291	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	54.735813	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	40.303391	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	35.932465	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	29.837364	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	43.16003	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	71.636169	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	67.697838	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	61.924381	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	53.79525	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	91.674652	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	59.824539	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	73.695885	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	85.130074	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	50.14888		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	81.783279		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	64.869438		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	51.99279		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	20.676193		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	40.934402		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	28.965593		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	35.446957		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	29.603291		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	71.6586	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	101.11554	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	106.079941	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	2.366821	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	2.78149	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	20.230537	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	17.998594	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	2.539938	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	25.992714	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	10.065773	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	7.730536	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	9.69699	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg21401, jg38283, jg4742, jg7679
Aizoaceae	Mesembryanthemum crystallinum	3	gene_12461, gene_14681, gene_23565
Amaranthaceae	Atriplex hortensis	3	Ah004494, Ah008097, Ah022887
Amaranthaceae	Beta vulgaris	2	BVRB_1g003520, BVRB_5g099340
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg18651, Sbi_jg23996, Sbi_jg37085, Sbi_jg4000 ... Sbi_jg49209, Sbi_jg7824
Amaranthaceae	Salicornia europaea	3	Seu_jg12208, Seu_jg4907, Seu_jg6034
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00000547, GOSA_00001091, GOSA_00006854
Amaranthaceae	Suaeda glauca	8	Sgl10963, Sgl16337, Sgl16365, Sgl23184, Sgl23197, Sgl28266 ... Sgl52160, Sgl57429
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000006155, gene:ENSEOMG00000011056 ... gene:ENSEOMG00000012712, gene:ENSEOMG00000021956, gene:ENSEOMG00000024032, gene:ENSEOMG00000027778, gene:ENSEOMG00000036606, gene:ENSEOMG00000043390, gene:ENSEOMG00000050270
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.1AG0001800, CQ.Regalona.r1.4AG0019630 ... CQ.Regalona.r1.4BG0019970, CQ.Regalona.r1.5AG0006200, CQ.Regalona.r1.5BG0006550
Anacardiaceae	Pistacia vera	4	pistato.v30005470, pistato.v30134820, pistato.v30134830 ... pistato.v30161140
Apiaceae	Apium graveolens	3	Ag11G03149, Ag3G00381, Ag6G00115
Arecaceae	Cocos nucifera	5	COCNU_06G002990, COCNU_06G004150, COCNU_14G000140 ... contig69346437G000010, contig69362463G000010
Arecaceae	Phoenix dactylifera	5	gene-LOC103708348, gene-LOC103709020, gene-LOC103713473 ... gene-LOC103721280, gene-LOC120112296
Asparagaceae	Asparagus officinalis	3	AsparagusV1_01.1508.V1.1, AsparagusV1_01.1509.V1.1 ... AsparagusV1_05.2729.V1.1
Asteraceae	Flaveria trinervia	8	Ftri13G30603, Ftri14G11337, Ftri14G18322, Ftri15G03900 ... Ftri3G27466, Ftri3G31722, Ftri4G24176, Ftri7G23246
Brassicaceae	Arabidopsis thaliana	4	AT1G53090.1, AT2G46340.1, AT3G15354.1, AT4G11110.1
Brassicaceae	Eutrema salsugineum	5	Thhalv10001291m.g.v1.0, Thhalv10011249m.g.v1.0 ... Thhalv10012045m.g.v1.0, Thhalv10020057m.g.v1.0, Thhalv10028383m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g39640.v2.2, Sp3g13540.v2.2, Sp4g28380.v2.2 ... Sp6g06310.v2.2
Brassicaceae	Brassica nigra	6	BniB01g049680.2N, BniB05g061940.2N, BniB06g027650.2N ... BniB08g030130.2N, BniB08g050940.2N, BniS06172g140.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq01G1036, Ceq03G0200
Casuarinaceae	Casuarina glauca	4	Cgl01G1149, Cgl01G1208, Cgl03G0226, Cgl03G0248
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno02g16740, gene.Cymno07g06000, gene.Cymno12g01770
Dunaliellaceae	Dunaliella salina	1	Dusal.0369s00002.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate03g12060, gene.Thate07g17950, gene.Thate09g15220
Malvaceae	Hibiscus hamabo Siebold & Zucc.	4	nbisL1-mrna-11216, nbisL1-mrna-11217, nbisL1-mrna-8290 ... nbisL1-mrna-8291
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG04.748, evm.TU.LG05.1603, evm.TU.LG10.1503
Plantaginaceae	Plantago ovata	3	Pov_00005319, Pov_00028431, Pov_00031342
Plumbaginaceae	Limonium bicolor	3	Lb2G08269, Lb2G11186, Lb6G32293
Poaceae	Echinochloa crus-galli	6	AH02.3029, AH05.1331, BH02.3114, BH05.1504, CH02.3403 ... CH05.1703
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_1AG0031720, gene-QOZ80_1BG0081920 ... gene-QOZ80_5AG0362570, gene-QOZ80_5BG0410740
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.1HG0090370.1, HORVU.MOREX.r3.3HG0286130.1
Poaceae	Lolium multiflorum	3	gene-QYE76_055005, gene-QYE76_055006, gene-QYE76_057161
Poaceae	Oryza coarctata	4	Oco01G020160, Oco02G019610, Oco09G017270, Oco10G017070
Poaceae	Oryza sativa	2	LOC_Os01g52640.3, LOC_Os05g49590.1
Poaceae	Paspalum vaginatum	2	gene-BS78_03G261700, gene-BS78_09G241700
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0505606, Pt_Chr0505671, Pt_Chr0602795, Pt_Chr0602796 ... Pt_Chr0602808
Poaceae	Sporobolus alterniflorus	10	Chr01G015840, Chr02G010760, Chr03G015280, Chr08G015340 ... Chr0G026410, Chr0G031010, Chr12G020890, Chr18G016590, Chr20G007260, Chr22G000840
Poaceae	Thinopyrum elongatum	2	Tel1E01G678500, Tel3E01G467500
Poaceae	Triticum dicoccoides	4	gene_TRIDC1AG060430, gene_TRIDC1BG069180 ... gene_TRIDC3AG042090, gene_TRIDC3BG047690
Poaceae	Triticum aestivum	5	TraesCS1D02G417600.1, TraesCS3A02G284700.2 ... TraesCS3B02G318600.1, TraesCS3D02G284500.2, TraesCS7A02G175900.1
Poaceae	Zea mays	6	Zm00001eb026560_P002, Zm00001eb154420_P004 ... Zm00001eb274370_P001, Zm00001eb296410_P001, Zm00001eb344140_P001, Zm00001eb361760_P002
Poaceae	Zoysia japonica	1	nbis-gene-12784
Poaceae	Zoysia macrostachya	2	Zma_g27411, Zma_g28832
Portulacaceae	Portulaca oleracea	6	evm.TU.LG02.723, evm.TU.LG04.3288, evm.TU.LG09.1894 ... evm.TU.LG16.312, evm.TU.LG19.1258, evm.TU.LG24.1260
Posidoniaceae	Posidonia oceanica	3	gene.Posoc08g10450, gene.Posoc09g05600, gene.Posoc09g08550
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_16_RagTag.106, evm.TU.Scaffold_5_RagTag.211 ... evm.TU.Scaffold_9_RagTag.176
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-21867, nbisL1-mrna-22351
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-13591, nbisL1-mrna-3278, nbisL1-mrna-4390 ... nbisL1-mrna-9099
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-10580, nbisL1-mrna-20376, nbisL1-mrna-7523
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000003l.118, evm.TU.utg000006l.134 ... evm.TU.utg000022l.428
Rhizophoraceae	Kandelia obovata	3	Maker00013075, Maker00014245, Maker00017561
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-3569, nbisL1-mrna-6744, nbisL1-mrna-9156
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-21701, nbisL1-mrna-6739, nbisL1-mrna-7085
Salicaceae	Populus euphratica	7	populus_peu00525, populus_peu00528, populus_peu03654 ... populus_peu17574, populus_peu27593, populus_peu34503, populus_peu38177
Solanaceae	Lycium barbarum	4	gene-LOC132620297, gene-LOC132632465, gene-LOC132634818 ... gene-LOC132636473
Solanaceae	Solanum chilense	4	SOLCI000577800, SOLCI002243500, SOLCI002865300 ... SOLCI005350500
Solanaceae	Solanum pennellii	4	gene-LOC107002639, gene-LOC107007180, gene-LOC107026003 ... gene-LOC107028458
Tamaricaceae	Reaumuria soongarica	3	STRG.23360_chr05_+, STRG.3284_chr01_+, STRG.9708_chr06_+
Tamaricaceae	Tamarix chinensis	3	TC01G4251, TC07G0211, TC09G2308
Zosteraceae	Zostera marina	2	Zosma01g23410.v3.1, Zosma05g03450.v3.1