Basic Information
Locus ID:
Ag3G00377
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
cytochrome c oxidase copper
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 9302608 | 9304405 | - | Ag3G00377 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.24 | 8,650.80 Da | 42.21 | 63.50 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05051 | Cytochrome C oxidase copper chaperone (COX17) | 36 | 80 | 5.3E-19 | IPR007745 |
| SUPERFAMILY | SSF47072 | Cysteine alpha-hairpin motif | 26 | 80 | 4.18E-20 | IPR009069 |
| Gene3D | G3DSA:1.10.287.1130 | CytochromE C oxidase copper chaperone | 14 | 80 | 2.2E-23 | - |
| ProSiteProfiles | PS51808 | Coiled coil-helix-coiled coil-helix (CHCH) domain profile. | 40 | 80 | 11.788019 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 36 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15352.1 | cytochrome c oxidase 17. Encodes protein similar to yeast COX17, a copper-binding protein that mediates the delivery of Cu to the mitochondria for the assembly of a functional cytochrome oxidase complex. | 0 |
| RefSeq | XP_017244253.1 | PREDICTED: cytochrome c oxidase copper chaperone 1-like [Daucus carota subsp. sativus] | 0 |
| Q9LJQ9 | Cytochrome c oxidase copper chaperone 1 OS=Arabidopsis thaliana OX=3702 GN=COX17-1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A165Z2D3 | Cytochrome c oxidase copper chaperone 1-like OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_013105 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 40.720062 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 32.859917 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 31.411205 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 30.100414 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 33.613182 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 39.411102 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 37.634651 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 36.568142 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 21.535814 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 18.525309 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 15.980535 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 27.394423 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 28.250383 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 24.986399 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 16.191227 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 15.012042 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 20.585768 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 15.400266 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 16.613279 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 31.602823 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 37.989807 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 29.481495 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 28.484911 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 25.47053 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 23.448051 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 20.492941 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 16.727917 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 18.094362 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 17.990728 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 31.360767 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 21.47492 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 19.865856 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 18.75395 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 45.444122 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 25.696838 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 29.318783 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 15.21113 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 29.491148 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 9.945105 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 8.803215 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 13.628693 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 90.309082 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 23.594442 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 16.927729 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 16.492266 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 135.787277 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 14.091547 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 65.600487 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 64.099342 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 58.447067 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg19474, jg38287 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_7450 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah008160 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg18660 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg4916 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl28259 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30265830 |
| Apiaceae | Apium graveolens | 2 | Ag2G01590, Ag3G00377 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G005010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103717196, gene-LOC120106193 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.3421.V1.1, AsparagusV1_05.1763.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri7G07985 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G53030.1, AT3G15352.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10011917m.g.v1.0, Thhalv10021884m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g13580.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB07g054330.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1033 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G1145, Cgl01G1204 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.1013s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g02760 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-1079, nbisL1-mrna-8289 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00031346 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G27629 |
| Poaceae | Echinochloa crus-galli | 2 | AH03.1943, BH03.1988 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0148860, gene-QOZ80_2BG0205350 ... |
| Poaceae | Oryza coarctata | 2 | Oco17G005050, Oco18G005090 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g55134.1, LOC_Os09g25314.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G184900, gene-BS78_04G304900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0702169 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr09G003130, Chr09G017780, Chr12G026340, Chr13G001970 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G366800 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC5AG035860, gene_TRIDC5BG037730 ... |
| Poaceae | Triticum aestivum | 8 | TraesCS5A02G224100.1.cds1, TraesCS5B02G222900.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb312990_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-20056, nbis-gene-39932 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g17324, Zma_g32403 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g37430, gene.Posoc02g07530 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-11239, nbisL1-mrna-21871, nbisL1-mrna-21873 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16856 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10583 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7089 |
| Salicaceae | Populus euphratica | 2 | populus_peu00521, populus_peu17580 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132618387, gene-LOC132628820 |
| Solanaceae | Solanum chilense | 2 | SOLCI002996600, SOLCI006692600 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002572, gene-LOC107024590 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_15495, gene_17836 |
| Tamaricaceae | Tamarix chinensis | 2 | TC06G0335, TC06G0356 |
| Zosteraceae | Zostera marina | 1 | Zosma01g20710.v3.1 |