halophFGD

Basic Information

Locus ID: Ag3G00358

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Short Name: PORA

Description: protochlorophyllide

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	8941766	8948335	+	Ag3G00358

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.93	35,410.75 Da	34.55	80.31	-0.20

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd09810	LPOR_like_SDR_c_like	54	326	5.15836E-173	-
SUPERFAMILY	SSF51735	NAD(P)-binding Rossmann-fold domains	52	295	8.66E-26	IPR036291
Gene3D	G3DSA:3.40.50.720	-	13	80	5.5E-6	-
Gene3D	G3DSA:3.40.50.720	-	81	327	1.1E-31	-
TIGRFAM	TIGR01289	LPOR: light-dependent protochlorophyllide reductase	81	327	3.2E-140	IPR005979
PRINTS	PR00081	Glucose/ribitol dehydrogenase family signature	224	241	1.1E-8	IPR002347
PRINTS	PR00081	Glucose/ribitol dehydrogenase family signature	56	73	1.1E-8	IPR002347
PRINTS	PR00081	Glucose/ribitol dehydrogenase family signature	91	102	1.1E-8	IPR002347

Gene Ontology

Molecular Function:

GO:0016491 (oxidoreductase activity) GO:0016630 (protochlorophyllide reductase activity)

KEGG Pathway

KO Term:

K00218 (protochlorophyllide reductase [EC:1.3.1.33])

Pathway:

ko00860 (Porphyrin metabolism) map00860 (Porphyrin metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites)

Reaction:

R03845 (Chlorophyllide + NADP+ <=> Protochlorophyllide + NADPH + H+) R06286 (Divinyl chlorophyllide a + NADP+ <=> Divinylprotochlorophyllide + NADPH + H+)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G27440.1	protochlorophyllide oxidoreductase B. light-dependent NADPH:protochlorophyllide oxidoreductase B
RefSeq	XP_017248293.1	PREDICTED: protochlorophyllide reductase, chloroplastic [Daucus carota subsp. sativus]
Swiss-Prot	Q9SDT1	Protochlorophyllide reductase, chloroplastic OS=Daucus carota OX=4039 GN=POR1 PE=2 SV=1
TrEMBL	A0A162ADD6	NADPH-protochlorophyllide oxidoreductase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_013086 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	32.241322	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	60.13868	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	24.907188	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	26.503857	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	27.345339	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	34.113331	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	12.748705	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	6.347243	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	79.462753	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	100.331253	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	65.854324	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	59.494328	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	56.491791	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	69.866165	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	350.666412	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	600.78717	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	566.493469	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	1115.790039	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	1479.312378	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	905.482239	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	946.955994	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	374.778229	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	355.643188	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	402.056519	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	638.449158	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	1047.572632	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	1100.042725	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	1099.476318	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	971.033691	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	4636.359863		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	8310.245117		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	8727.143555		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	527.908142		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	421.278931		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	492.938721		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	1198.640747		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	1466.501709		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	917.416565		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	3244.011963	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	3674.895752	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	235.319183	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	19.238026	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	25.187122	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	182.457047	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	565.207275	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	39.735069	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	160.466461	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	128.174957	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	81.087852	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	81.110222	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg24227
Aizoaceae	Mesembryanthemum crystallinum	2	gene_12440, gene_25861
Amaranthaceae	Atriplex hortensis	2	Ah008206, Ah037312
Amaranthaceae	Beta vulgaris	2	BVRB_4g087610, BVRB_9g208630
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg11843, Sbi_jg18713, Sbi_jg37153, Sbi_jg46568
Amaranthaceae	Salicornia europaea	2	Seu_jg21075, Seu_jg4975
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00006919, GOSA_00021008
Amaranthaceae	Suaeda glauca	4	Sgl23057, Sgl28171, Sgl80177, Sgl82626
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000010826, gene:ENSEOMG00000016523 ... gene:ENSEOMG00000028332, gene:ENSEOMG00000036454, gene:ENSEOMG00000040977, gene:ENSEOMG00000050847
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.4AG0020130, CQ.Regalona.r1.4BG0020820 ... CQ.Regalona.r1.9AG0007010, CQ.Regalona.r1.9BG0015240
Anacardiaceae	Pistacia vera	1	pistato.v30019630
Apiaceae	Apium graveolens	2	Ag11G03379, Ag3G00358
Arecaceae	Cocos nucifera	1	COCNU_07G012680
Arecaceae	Phoenix dactylifera	1	gene-LOC103696187
Asparagaceae	Asparagus officinalis	2	AsparagusV1_04.3330.V1.1, AsparagusV1_04.3331.V1.1
Asteraceae	Flaveria trinervia	3	Ftri16G00743, Ftri18G23473, Ftri3G06824
Brassicaceae	Arabidopsis thaliana	3	AT1G03630.1, AT4G27440.1, AT5G54190.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10007802m.g.v1.0, Thhalv10025367m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g02540.v2.2, Sp6g16250.v2.2, Sp7g25390.v2.2
Brassicaceae	Brassica nigra	4	BniB02g082950.2N, BniB03g000570.2N, BniB05g009950.2N ... BniB06g047140.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq01G1089, Ceq02G2587
Casuarinaceae	Casuarina glauca	2	Cgl01G1266, Cgl02G2670
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno10g01730
Dunaliellaceae	Dunaliella salina	1	Dusal.0059s00003.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate03g08850, gene.Thate08g23230, gene.Thate08g23240
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-1066
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG04.1883, evm.TU.LG05.1644
Plantaginaceae	Plantago ovata	2	Pov_00004509, Pov_00009068
Poaceae	Echinochloa crus-galli	7	AH01.1708, AH09.2717, BH01.1909, BH09.2958, CH01.2015 ... CH04.772, CH07.1923
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_3AG0241450, gene-QOZ80_3BG0286660 ... gene-QOZ80_4AG0299290, gene-QOZ80_4BG0329980
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.1HG0047060.1, HORVU.MOREX.r3.2HG0209470.2
Poaceae	Lolium multiflorum	2	gene-QYE76_011814, gene-QYE76_047553
Poaceae	Oryza coarctata	4	Oco07G019350, Oco08G018620, Oco19G007040, Oco20G007010
Poaceae	Oryza sativa	2	LOC_Os04g58200.1, LOC_Os10g35370.1
Poaceae	Paspalum vaginatum	3	gene-BS78_01G188400, gene-BS78_02G359500 ... gene-BS78_06G284700
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0307121
Poaceae	Sporobolus alterniflorus	4	Chr01G029790, Chr12G009730, Chr23G000800, Chr26G018490
Poaceae	Thinopyrum elongatum	2	Tel1E01G306100, Tel2E01G966000
Poaceae	Triticum dicoccoides	4	gene_TRIDC1AG026050, gene_TRIDC1BG030950 ... gene_TRIDC2AG078130, gene_TRIDC2BG086030
Poaceae	Triticum aestivum	7	TraesCS1A02G171000.1, TraesCS1B02G186300.1 ... TraesCS1D02G168700.2, TraesCS2A02G590600.1, TraesCS2B02G593000.1, TraesCS2D02G563600.1, TraesCS2D02G563700.1
Poaceae	Zea mays	3	Zm00001eb044650_P001, Zm00001eb066060_P003 ... Zm00001eb220940_P001
Poaceae	Zoysia japonica	3	nbis-gene-2225, nbis-gene-3860, nbis-gene-6205
Poaceae	Zoysia macrostachya	3	Zma_g1619, Zma_g22234, Zma_g4006
Portulacaceae	Portulaca oleracea	4	evm.TU.LG02.693, evm.TU.LG06.1002, evm.TU.LG09.1859 ... evm.TU.LG11.258
Posidoniaceae	Posidonia oceanica	2	gene.Posoc06g04180, gene.Posoc10g10610
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_5_RagTag.195, evm.TU.Scaffold_9_RagTag.1263
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-11201, nbisL1-mrna-20905, nbisL1-mrna-21916
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-8711, nbisL1-mrna-9592
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-10597, nbisL1-mrna-21248
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000003l.780, evm.TU.utg000006l.124
Rhizophoraceae	Kandelia obovata	2	Maker00009399, Maker00013044
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-1274, nbisL1-mrna-9144
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-4809, nbisL1-mrna-7107
Salicaceae	Populus euphratica	2	populus_peu16871, populus_peu16872
Solanaceae	Lycium barbarum	3	gene-LOC132616645, gene-LOC132628742, gene-LOC132636485
Solanaceae	Solanum chilense	3	SOLCI002779500, SOLCI002997700, SOLCI006095700
Solanaceae	Solanum pennellii	3	gene-LOC107002266, gene-LOC107007153, gene-LOC107025879
Tamaricaceae	Reaumuria soongarica	2	STRG.29982_chr10_+, gene_7692
Tamaricaceae	Tamarix chinensis	2	TC03G0336, TC07G0248
Zosteraceae	Zostera marina	2	Zosma01g35110.v3.1, Zosma05g24050.v3.1