Basic Information
Locus ID:
Ag3G00350
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
trafficking protein particle complex
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 8718973 | 8733578 | - | Ag3G00350 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 140,073.70 Da | 45.58 | 90.42 | -0.20 |
Protein Domain:
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54440.1 | CLUB. Encodes a putative TRAPPII tethering factor required for cell plate assembly during cytokinesis. | 0 |
| RefSeq | XP_017247274.1 | PREDICTED: trafficking protein particle complex II-specific subunit 130 homolog isoform X1 [Daucus carota subsp. sativus] | 0 |
| F4K0C4 | Trafficking protein particle complex II-specific subunit 130 homolog OS=Arabidopsis thaliana OX=3702 GN=TRS130 PE=1 SV=1 | 0 | |
| TrEMBL | A0A165Z3B9 | TRAPPC10 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_013079 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 16.555264 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 11.96973 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 10.416908 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 11.660306 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 10.495253 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 9.193979 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 9.693846 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 6.708929 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 32.14555 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 29.941975 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 33.304352 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 31.053869 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 33.66906 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 27.616194 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 17.742136 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 20.278858 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 21.008129 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 24.622149 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 17.808601 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 22.226473 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 23.542072 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 20.485249 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 23.402576 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 21.674995 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 22.118441 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 29.942905 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 22.485796 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 21.906961 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 26.651049 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 3.665951 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 4.433513 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.837999 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 10.317001 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 8.732435 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 8.881189 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 6.367739 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.894741 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.950347 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 22.974768 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 11.944649 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 7.338386 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 9.458399 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 16.000505 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 28.120674 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 25.17741 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 11.506169 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 30.317053 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 19.069002 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 21.159435 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 20.932779 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg38306 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_7417 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah008275 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g087330 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg18742, Sbi_jg37175 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg4997 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00006940 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl23037, Sgl28149 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011706, gene:ENSEOMG00000030489 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.4AG0020290, CQ.Regalona.r1.4AG0020380 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30160620 |
| Apiaceae | Apium graveolens | 1 | Ag3G00350 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103719770 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_08.3057.V1.1, AsparagusV1_08.3058.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri14G01565, Ftri15G01057 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G54440.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10012467m.g.v1.0, Thhalv10015732m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g16420.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g032920.2N, BniB05g034290.2N |
| Casuarinaceae | Casuarina equisetifolia | 4 | Ceq01G1101, Ceq01G1630, Ceq01G1631, Ceq01G1632 |
| Casuarinaceae | Casuarina glauca | 4 | Cgl01G1276, Cgl01G1782, Cgl01G1785, Cgl01G1795 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno13g00020 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0241s00012.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g16190 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1666 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00031420 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G19359 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.774, BH06.822, CH06.857 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0393470, gene-QOZ80_5BG0441680 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0444370.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_001930 |
| Poaceae | Oryza coarctata | 2 | Oco23G008140, Oco24G007750 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g36760.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G094400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0703817 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr04G016830, Chr19G009480, Chr27G006990 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G178900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG014120, gene_TRIDC5BG016090 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G091200.1, TraesCS5B02G098200.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb137170_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-30308 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g25958 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.2084, evm.TU.LG14.1258 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g00070 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.225 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21943 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10306 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-18593, nbisL1-mrna-18594 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.663 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009277 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6775 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12565 |
| Salicaceae | Populus euphratica | 2 | populus_peu17532, populus_peu17533 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132619341 |
| Solanaceae | Solanum chilense | 1 | SOLCI003377500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107025931 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6885 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G0262 |
| Zosteraceae | Zostera marina | 1 | Zosma03g32660.v3.1 |