halophFGD

Basic Information

Locus ID: Ag3G00292

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: ubiquitin-conjugating enzyme

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	7497937	7502473	-	Ag3G00292

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.43	54,624.71 Da	43.94	63.95	-0.59

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00195	UBCc	253	399	8.09744E-34	IPR000608
Pfam	PF00179	Ubiquitin-conjugating enzyme	250	396	2.7E-23	IPR000608
SUPERFAMILY	SSF54495	UBC-like	231	414	1.57E-40	IPR016135
Gene3D	G3DSA:3.10.110.10	Ubiquitin Conjugating Enzyme	202	479	8.2E-83	IPR016135
SMART	SM00212	ubc_7	248	405	2.1E-22	-
ProSiteProfiles	PS50127	Ubiquitin-conjugating (UBC) core domain profile.	245	405	35.827747	IPR000608
MobiDBLite	mobidb-lite	consensus disorder prediction	182	206	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	188	206	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	108	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	22	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	70	108	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	34	61	-	-

KEGG Pathway

KO Term:

K10581 (ubiquitin-conjugating enzyme E2 O [EC:2.3.2.24])

Pathway:

ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G53025.1	Ubiquitin-conjugating enzyme family protein.
RefSeq	XP_017243570.1	PREDICTED: putative ubiquitin-conjugating enzyme E2 38 [Daucus carota subsp. sativus]
Swiss-Prot	Q9C918	Putative ubiquitin-conjugating enzyme E2 38 OS=Arabidopsis thaliana OX=3702 GN=UBC38 PE=3 SV=2
TrEMBL	A0A5B6ZFE8	UBC core domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_012146 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	34.830692	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	27.558111	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	31.130003	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	30.990681	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	29.009348	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	17.333538	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	24.824959	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	12.013702	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	30.307829	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	30.418686	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	29.079514	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	28.789415	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	30.897095	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	29.667376	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	12.2434	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	12.713421	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	11.239683	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	17.035505	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	10.993549	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	22.977768	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	31.900135	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	18.879232	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	16.500025	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	16.830551	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	25.965439	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	12.129491	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	10.896617	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	13.136642	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	14.305068	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	5.230686		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	5.131641		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	4.770914		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	15.052673		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	25.39789		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	15.32866		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	19.675608		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	9.400406		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	12.201262		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	8.425636	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	8.646351	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	5.009184	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	10.305053	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	14.400227	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	14.020387	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	13.01158	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	13.633796	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	14.04108	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	30.723034	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	33.348083	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	30.666403	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg19470, jg24454, jg26130, jg5630, jg5633
Aizoaceae	Mesembryanthemum crystallinum	5	gene_15657, gene_21052, gene_2930, gene_2931, gene_7448
Amaranthaceae	Atriplex hortensis	3	Ah008153, Ah012098, Ah019245
Amaranthaceae	Beta vulgaris	4	BVRB_3g054350, BVRB_4g086990, BVRB_4g087020, BVRB_9g204860
Amaranthaceae	Salicornia bigelovii	9	Sbi_jg11787, Sbi_jg11788, Sbi_jg18663, Sbi_jg37101 ... Sbi_jg38066, Sbi_jg38067, Sbi_jg46617, Sbi_jg47225, Sbi_jg6198
Amaranthaceae	Salicornia europaea	3	Seu_jg15645, Seu_jg21020, Seu_jg4918
Amaranthaceae	Suaeda aralocaspica	4	GOSA_00006246, GOSA_00006871, GOSA_00006873, GOSA_00016807
Amaranthaceae	Suaeda glauca	9	Sgl00686, Sgl00803, Sgl05702, Sgl23162, Sgl23163, Sgl28256 ... Sgl28257, Sgl80041, Sgl82474
Amaranthaceae	Chenopodium album	8	gene:ENSEOMG00000011786, gene:ENSEOMG00000015160 ... gene:ENSEOMG00000028661, gene:ENSEOMG00000030227, gene:ENSEOMG00000037779, gene:ENSEOMG00000041150, gene:ENSEOMG00000042145, gene:ENSEOMG00000049431
Amaranthaceae	Chenopodium quinoa	7	CQ.Regalona.r1.2AG0002840, CQ.Regalona.r1.3AG0000360 ... CQ.Regalona.r1.3BG0000290, CQ.Regalona.r1.4AG0019830, CQ.Regalona.r1.4BG0020120, CQ.Regalona.r1.9AG0007290, CQ.Regalona.r1.9BG0014620
Anacardiaceae	Pistacia vera	2	pistato.v30019850, pistato.v30161090
Apiaceae	Apium graveolens	7	Ag11G03142, Ag11G03391, Ag2G00249, Ag3G00292, Ag4G02056 ... Ag7G01733, Ag8G01792
Arecaceae	Cocos nucifera	3	COCNU_02G003940, COCNU_03G011660, scaffold020239G000020
Arecaceae	Phoenix dactylifera	2	gene-LOC103702531, gene-LOC103718674
Asparagaceae	Asparagus officinalis	5	AsparagusV1_01.1346.V1.1, AsparagusV1_01.1347.V1.1 ... AsparagusV1_01.467.V1.1, AsparagusV1_06.1714.V1.1, AsparagusV1_09.807.V1.1
Asteraceae	Flaveria trinervia	5	Ftri14G10070, Ftri4G25074, Ftri5G10446, Ftri7G03049 ... Ftri8G31022
Brassicaceae	Arabidopsis thaliana	3	AT1G53023.1, AT1G53025.1, AT3G15355.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10011411m.g.v1.0, Thhalv10020387m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp1g39580.v2.2, Sp3g13590.v2.2
Brassicaceae	Brassica nigra	13	BniB01g023290.2N, BniB01g026020.2N, BniB01g049620.2N ... BniB03g058660.2N, BniB03g061810.2N, BniB04g056370.2N, BniB06g023020.2N, BniB06g027800.2N, BniB06g027820.2N, BniB06g027860.2N, BniB07g003160.2N, BniB07g028220.2N, BniB07g054320.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq01G1031, Ceq02G2623, Ceq09G1030
Casuarinaceae	Casuarina glauca	4	Cgl01G1143, Cgl01G1202, Cgl02G2716, Cgl09G1119
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno02g16680
Dunaliellaceae	Dunaliella salina	3	Dusal.0029s00009.v1.0, Dusal.0130s00023.v1.0 ... Dusal.0357s00006.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate07g17910, gene.Thate09g07670
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-9199, nbisL1-mrna-9384
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG04.1841, evm.TU.LG05.1610
Plantaginaceae	Plantago ovata	6	Pov_00004531, Pov_00012982, Pov_00026266, Pov_00026269 ... Pov_00026270, Pov_00038713
Plumbaginaceae	Limonium bicolor	5	Lb1G06674, Lb1G06675, Lb4G26106, Lb6G32269, Lb7G33177
Poaceae	Echinochloa crus-galli	13	AH02.2737, AH02.68, AH02.76, AH05.574, BH02.58, BH02.65 ... BH05.617, CH02.3722, CH02.68, CH05.3666, CH05.3735, CH05.4056, CH05.715
Poaceae	Eleusine coracana subsp. coracana	13	gene-QOZ80_1AG0000580, gene-QOZ80_1AG0000670 ... gene-QOZ80_1AG0028480, gene-QOZ80_1BG0049020, gene-QOZ80_1BG0049080, gene-QOZ80_1BG0078670, gene-QOZ80_5AG0363680, gene-QOZ80_5AG0400920, gene-QOZ80_5AG0401190, gene-QOZ80_5BG0411800, gene-QOZ80_5BG0449480, gene-QOZ80_5BG0449750, gene-QOZ80_5BG0452540
Poaceae	Hordeum vulgare	8	HORVU.MOREX.r3.1HG0031770.1, HORVU.MOREX.r3.1HG0086000.1 ... HORVU.MOREX.r3.1HG0091180.1, HORVU.MOREX.r3.3HG0223700.1, HORVU.MOREX.r3.3HG0249250.1, HORVU.MOREX.r3.3HG0249450.1, HORVU.MOREX.r3.3HG0249480.1, HORVU.MOREX.r3.3HG0279940.1
Poaceae	Lolium multiflorum	9	gene-QYE76_010470, gene-QYE76_014679, gene-QYE76_015748 ... gene-QYE76_047087, gene-QYE76_051592, gene-QYE76_051599, gene-QYE76_051603, gene-QYE76_051608, gene-QYE76_054554
Poaceae	Oryza coarctata	8	Oco01G005920, Oco01G006000, Oco02G006000, Oco02G006070 ... Oco09G005060, Oco09G016460, Oco10G004950, Oco10G016290
Poaceae	Oryza sativa	8	LOC_Os01g12950.2, LOC_Os01g13170.1, LOC_Os01g13280.1 ... LOC_Os01g48580.1, LOC_Os03g47580.1, LOC_Os05g14300.1, LOC_Os05g48380.1, LOC_Os09g12310.1
Poaceae	Paspalum vaginatum	6	gene-BS78_03G004500, gene-BS78_03G005200, gene-BS78_K190700 ... gene-BS78_03G230300, gene-BS78_09G111000, gene-BS78_09G231300
Poaceae	Puccinellia tenuiflora	8	Pt_Chr0204844, Pt_Chr0204851, Pt_Chr0300106, Pt_Chr0300128 ... Pt_Chr0501448, Pt_Chr0505734, Pt_Chr0505742, Pt_Chr0602341
Poaceae	Sporobolus alterniflorus	17	Chr01G010930, Chr02G012780, Chr03G000650, Chr05G020890 ... Chr06G020550, Chr08G004800, Chr12G025980, Chr14G017420, Chr14G017440, Chr14G017480, Chr18G004940, Chr19G007160, Chr21G016290, Chr21G016310, Chr21G016320, Chr22G001610, Chr22G012340
Poaceae	Thinopyrum elongatum	12	Tel1E01G234600, Tel1E01G634200, Tel2E01G122400 ... Tel2E01G971500, Tel3E01G052100, Tel3E01G280800, Tel3E01G281700, Tel3E01G281900, Tel3E01G446000, Tel4E01G487100, Tel4E01G487400, Tel5E01G424700
Poaceae	Triticum dicoccoides	12	gene_TRIDC1AG019850, gene_TRIDC1AG057040 ... gene_TRIDC1BG022550, gene_TRIDC1BG065600, gene_TRIDC3AG021240, gene_TRIDC3AG021380, gene_TRIDC3AG040110, gene_TRIDC3BG025480, gene_TRIDC3BG025600, gene_TRIDC3BG045320, gene_TRIDC5AG019620, gene_TRIDC5BG043720
Poaceae	Triticum aestivum	27	TraesCS1A02G129500.2, TraesCS1A02G388000.1 ... TraesCS1B02G146400.2, TraesCS1B02G415500.2, TraesCS1D02G125200.2, TraesCS1D02G396000.2, TraesCS2A02G441700.1, TraesCS3A02G030200.1.cds1, TraesCS3A02G156300.1, TraesCS3A02G157200.1, TraesCS3A02G157300.2, TraesCS3A02G269200.1, TraesCS3B02G029300.1.cds1, TraesCS3B02G183000.1, TraesCS3B02G183600.1, TraesCS3B02G183800.2, TraesCS3B02G303300.1, TraesCS3D02G164200.1, TraesCS3D02G164800.2, TraesCS3D02G164900.3, TraesCS3D02G269000.1, TraesCS4D02G289700.1.cds1, TraesCS5B02G264000.1, TraesCS5D02G272300.1, TraesCS5D02G272400.1, TraesCS7B02G110500.1.cds1, TraesCS7D02G206600.1
Poaceae	Zea mays	6	Zm00001eb119100_P001, Zm00001eb119150_P003 ... Zm00001eb295480_P003, Zm00001eb339310_P001, Zm00001eb343290_P002, Zm00001eb399020_P001
Poaceae	Zoysia japonica	6	nbis-gene-13706, nbis-gene-13707, nbis-gene-24259 ... nbis-gene-26081, nbis-gene-32728, nbis-gene-32732
Poaceae	Zoysia macrostachya	5	Zma_g10867, Zma_g27357, Zma_g7175, Zma_g7178, Zma_g9493
Portulacaceae	Portulaca oleracea	4	evm.TU.LG02.717, evm.TU.LG09.1888, evm.TU.LG18.447 ... evm.TU.LG26.591
Posidoniaceae	Posidonia oceanica	6	gene.Posoc08g10730, gene.Posoc08g10740, gene.Posoc09g03630 ... gene.Posoc09g05490, gene.Posoc09g05500, gene.Posoc09g05960
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_3_RagTag.661, evm.TU.Scaffold_3_RagTag.662 ... evm.TU.Scaffold_3_RagTag.663, evm.TU.Scaffold_5_RagTag.1358, evm.TU.Scaffold_9_RagTag.172
Rhizophoraceae	Carallia pectinifolia	6	nbisL1-mrna-11868, nbisL1-mrna-1313, nbisL1-mrna-1314 ... nbisL1-mrna-1315, nbisL1-mrna-19278, nbisL1-mrna-21876
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-10198, nbisL1-mrna-1814, nbisL1-mrna-18447 ... nbisL1-mrna-18448
Rhizophoraceae	Ceriops zippeliana	6	nbisL1-mrna-11104, nbisL1-mrna-6346, nbisL1-mrna-6347 ... nbisL1-mrna-6348, nbisL1-mrna-7525, nbisL1-mrna-7526
Rhizophoraceae	Kandelia candel	5	add.evm.TU.utg000019l.339, add.evm.TU.utg000019l.340 ... evm.TU.utg000003l.116, evm.TU.utg000006l.794, evm.TU.utg000019l.818
Rhizophoraceae	Kandelia obovata	4	Maker00012584, Maker00012812, Maker00013924, Maker00017534
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-10318, nbisL1-mrna-18836, nbisL1-mrna-22229 ... nbisL1-mrna-5282, nbisL1-mrna-6742
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-21699, nbisL1-mrna-4047, nbisL1-mrna-7143
Salicaceae	Populus euphratica	7	populus_peu00519, populus_peu06883, populus_peu16820 ... populus_peu17582, populus_peu20799, populus_peu37387, populus_peu37497
Solanaceae	Lycium barbarum	4	gene-LOC132604489, gene-LOC132616651, gene-LOC132628806 ... gene-LOC132636477
Solanaceae	Solanum chilense	3	SOLCI000578000, SOLCI002996700, SOLCI003482400
Solanaceae	Solanum pennellii	3	gene-LOC107005689, gene-LOC107024308, gene-LOC107032300
Tamaricaceae	Reaumuria soongarica	4	STRG.3272_chr01_-, gene_10553, gene_14341, gene_4232
Tamaricaceae	Tamarix chinensis	4	TC01G2621, TC02G1560, TC07G0229, TC07G1292
Zosteraceae	Zostera marina	2	Zosma01g23440.v3.1, Zosma04g08520.v3.1