Basic Information
Locus ID:
Ag3G00286
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 7361485 | 7364733 | + | Ag3G00286 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.23 | 59,732.12 Da | 44.08 | 80.04 | -0.58 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28260.1 | 0 | |
| RefSeq | XP_017243501.1 | PREDICTED: uncharacterized protein LOC108215532 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A165Z5G9 | C2H2-type domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_013003 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 26.094292 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 26.885412 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 17.116703 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 18.864243 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 20.257093 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 22.768269 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 22.630783 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 22.308584 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 49.95647 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 45.752304 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 57.439606 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 62.397415 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 64.708702 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 58.266251 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 22.586842 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 23.520813 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 29.996162 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 27.338301 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 23.897419 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 27.081507 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 27.169533 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 28.357546 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 28.946823 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 29.091131 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 30.493773 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 28.683104 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 27.860241 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 25.647139 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 29.699425 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 21.275593 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 23.18689 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 16.499342 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 32.818966 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 33.888962 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 31.105749 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 24.397587 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 17.227474 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 19.890385 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 31.924498 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 28.266077 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 17.375425 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 33.663509 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 35.723351 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 61.930931 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 59.862652 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 31.782413 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 49.090202 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 46.852238 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 44.679237 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 44.144043 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg38180 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25881 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah012153 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g206590 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11795, Sbi_jg46608 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg21029 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00016790 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl80067, Sgl82504 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000016399, gene:ENSEOMG00000037215 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.9AG0007240, CQ.Regalona.r1.9BG0015110 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30019720 |
| Apiaceae | Apium graveolens | 1 | Ag3G00286 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G012500 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103719200 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.1649.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri5G27403 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G28260.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024944m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g26220.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g083440.2N, BniB03g011840.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2601 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2686 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g01840 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g09530 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5755 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1861 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00004521 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G20651 |
| Poaceae | Echinochloa crus-galli | 1 | AH01.1687 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0112650, gene-QOZ80_2BG0166020 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0047580.1 |
| Poaceae | Oryza coarctata | 2 | Oco19G007300, Oco20G007210 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g35710.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G186400 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G309200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG025760, gene_TRIDC1BG031270 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G169000.1, TraesCS1B02G187900.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb044390_P005, Zm00001eb044450_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-45333 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g12699 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.1316, evm.TU.LG21.1235 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g04530 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.1369, evm.TU.Scaffold_9_RagTag.1253 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-11885, nbisL1-mrna-20915 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-14286, nbisL1-mrna-8704 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11093, nbisL1-mrna-21240 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.775, evm.TU.utg000006l.800 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00009733, Maker00013889 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-10325, nbisL1-mrna-1280 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-15359, nbisL1-mrna-4821, nbisL1-mrna-7132 |
| Salicaceae | Populus euphratica | 1 | populus_peu16844 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132630472 |
| Solanaceae | Solanum chilense | 1 | SOLCI006368500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002546 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_13698 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G1775 |
| Zosteraceae | Zostera marina | 1 | Zosma05g29830.v3.1 |