halophFGD

Basic Information

Locus ID: Ag3G00260

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: LRR-repeat protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	6941030	6945115	-	Ag3G00260

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.58	56,565.03 Da	51.54	99.42	-0.04

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF07723	Leucine Rich Repeat	198	222	0.005	IPR013101
Pfam	PF08387	FBD	420	462	5.4E-6	IPR006566
SUPERFAMILY	SSF81383	F-box domain	11	62	6.02E-8	IPR036047
SUPERFAMILY	SSF52047	RNI-like	59	477	3.92E-5	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	178	385	3.2E-9	IPR032675
Gene3D	G3DSA:1.20.1280.50	-	7	80	4.0E-5	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	24	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G78760.1	F-box/RNI-like superfamily protein.
RefSeq	XP_017244602.1	PREDICTED: putative F-box protein At1g49610 [Daucus carota subsp. sativus]
Swiss-Prot	Q9ZV94	Putative F-box/FBD/LRR-repeat protein At1g78760 OS=Arabidopsis thaliana OX=3702 GN=At1g78760 PE=4 SV=1
TrEMBL	A0A165Z640	FBD domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_012983 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	67.510635	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	41.400452	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	51.418865	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	47.629253	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	50.633484	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	46.689335	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	53.671398	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	60.526291	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	19.729038	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	20.394783	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	25.059866	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	21.821959	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	20.312878	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	18.078253	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	8.800815	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	6.433698	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	9.034079	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	8.401464	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	9.672634	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	7.768197	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	9.40906	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	11.18193	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	14.316671	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	12.919688	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	10.584162	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	10.449039	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	10.08557	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	9.854074	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	12.262858	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	5.372368		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	6.814344		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	6.102716		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	17.487335		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	13.531301		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	13.866413		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	9.653566		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	6.097504		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	6.917666		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	14.272362	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	8.998683	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	5.794815	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	6.053216	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	11.40897	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	18.379103	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	20.914745	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	6.4159	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	18.841448	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	16.593699	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	15.818376	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	18.641945	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg3974
Aizoaceae	Mesembryanthemum crystallinum	34	gene_17174, gene_17440, gene_18204, gene_21078, gene_21079 ... gene_21123, gene_21124, gene_21126, gene_21127, gene_21128, gene_21129, gene_22186, gene_22187, gene_238, gene_239, gene_240, gene_24445, gene_25944, gene_25945, gene_25946, gene_25949, gene_25951, gene_25959, gene_25960, gene_25961, gene_262, gene_263, gene_397, gene_398, gene_400, gene_6464, gene_6465, gene_8234, gene_8235
Amaranthaceae	Atriplex hortensis	17	Ah006344, Ah008886, Ah008887, Ah008891, Ah011938, Ah013598 ... Ah017370, Ah017379, Ah017873, Ah017876, Ah023906, Ah023907, Ah023909, Ah023912, Ah023913, Ah023914, Ah023915
Amaranthaceae	Beta vulgaris	3	BVRB_6g135730, BVRB_6g148480, BVRB_8g181500
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg29308, Sbi_jg3544, Sbi_jg3545, Sbi_jg3546, Sbi_jg39262 ... Sbi_jg57477
Amaranthaceae	Salicornia europaea	3	Seu_jg11118, Seu_jg25165, Seu_jg6417
Amaranthaceae	Suaeda aralocaspica	6	GOSA_00000871, GOSA_00002017, GOSA_00002023, GOSA_00002024 ... GOSA_00008556, GOSA_00023935
Amaranthaceae	Suaeda glauca	38	Sgl00177, Sgl03204, Sgl03216, Sgl05228, Sgl05235, Sgl08311 ... Sgl08619, Sgl11784, Sgl11941, Sgl35772, Sgl35773, Sgl35774, Sgl35778, Sgl35808, Sgl35810, Sgl35812, Sgl41085, Sgl41086, Sgl41087, Sgl41123, Sgl41125, Sgl45763, Sgl45803, Sgl50507, Sgl63236, Sgl63237, Sgl63238, Sgl63239, Sgl63372, Sgl63373, Sgl63374, Sgl63375, Sgl63376, Sgl63377, Sgl67848, Sgl67849, Sgl67850, Sgl78069
Amaranthaceae	Chenopodium album	13	gene:ENSEOMG00000003161, gene:ENSEOMG00000003283 ... gene:ENSEOMG00000009829, gene:ENSEOMG00000012500, gene:ENSEOMG00000012551, gene:ENSEOMG00000014675, gene:ENSEOMG00000027282, gene:ENSEOMG00000030141, gene:ENSEOMG00000042580, gene:ENSEOMG00000046836, gene:ENSEOMG00000047041, gene:ENSEOMG00000048338, gene:ENSEOMG00000048657
Amaranthaceae	Chenopodium quinoa	15	CQ.Regalona.r1.1BG0014180, CQ.Regalona.r1.1BG0014190 ... CQ.Regalona.r1.1BG0014200, CQ.Regalona.r1.1BG0014210, CQ.Regalona.r1.4BG0024710, CQ.Regalona.r1.6AG0004980, CQ.Regalona.r1.6AG0004990, CQ.Regalona.r1.6AG0023810, CQ.Regalona.r1.6BG0005170, CQ.Regalona.r1.6BG0005180, CQ.Regalona.r1.6BG0005190, CQ.Regalona.r1.6BG0025140, CQ.Regalona.r1.8AG0004030, CQ.Regalona.r1.8BG0000770, CQ.Regalona.r1.8BG0004190
Apiaceae	Apium graveolens	1	Ag3G00260
Arecaceae	Cocos nucifera	1	COCNU_06G010190
Arecaceae	Phoenix dactylifera	2	gene-LOC103714491, gene-LOC103719351
Asteraceae	Flaveria trinervia	1	Ftri15G16068
Brassicaceae	Arabidopsis thaliana	10	AT1G49610.1, AT1G57690.1, AT3G03360.1, AT3G18150.1 ... AT3G28410.1, AT5G02700.1, AT5G02910.1, AT5G02920.1, AT5G02930.1, AT5G03100.1
Brassicaceae	Eutrema salsugineum	14	Thhalv10013441m.g.v1.0, Thhalv10014018m.g.v1.0 ... Thhalv10014041m.g.v1.0, Thhalv10015785m.g.v1.0, Thhalv10017536m.g.v1.0, Thhalv10021970m.g.v1.0, Thhalv10022165m.g.v1.0, Thhalv10022252m.g.v1.0, Thhalv10025165m.g.v1.0, Thhalv10026908m.g.v1.0, Thhalv10027265m.g.v1.0, Thhalv10027555m.g.v1.0, Thhalv10029332m.g.v1.0, Thhalv10029491m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp2g05870.v2.2, Sp6g39690.v2.2, SpUn0028_0070.v2.2
Brassicaceae	Brassica nigra	17	BniB01g045590.2N, BniB01g046270.2N, BniB01g046290.2N ... BniB02g040550.2N, BniB02g057230.2N, BniB02g057250.2N, BniB02g057330.2N, BniB02g057340.2N, BniB03g039070.2N, BniB04g019020.2N, BniB05g002970.2N, BniB05g002980.2N, BniB05g023310.2N, BniB08g000850.2N, BniB08g000920.2N, BniB08g025960.2N, BniB08g025970.2N
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate05g29060
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-986
Plantaginaceae	Plantago ovata	66	Pov_00000097, Pov_00000302, Pov_00001140, Pov_00001142 ... Pov_00002228, Pov_00002664, Pov_00003570, Pov_00004423, Pov_00006395, Pov_00006966, Pov_00006967, Pov_00007045, Pov_00014220, Pov_00018783, Pov_00018784, Pov_00018786, Pov_00018787, Pov_00019745, Pov_00019746, Pov_00019970, Pov_00019971, Pov_00019972, Pov_00019976, Pov_00020011, Pov_00020012, Pov_00020014, Pov_00020015, Pov_00020017, Pov_00020020, Pov_00020309, Pov_00022336, Pov_00022337, Pov_00022339, Pov_00022341, Pov_00022352, Pov_00022354, Pov_00022355, Pov_00022356, Pov_00022358, Pov_00022590, Pov_00022704, Pov_00023309, Pov_00025764, Pov_00025765, Pov_00026111, Pov_00028397, Pov_00028449, Pov_00029108, Pov_00030886, Pov_00031129, Pov_00032079, Pov_00032925, Pov_00038493, Pov_00038494, Pov_00038495, Pov_00038496, Pov_00038497, Pov_00038499, Pov_00039026, Pov_00039147, Pov_00039780, Pov_00040059, Pov_00040070, Pov_00040075, Pov_00041523, Pov_00041592
Plumbaginaceae	Limonium bicolor	1	Lb2G09011
Portulacaceae	Portulaca oleracea	4	evm.TU.LG01.1685, evm.TU.LG13.223, evm.TU.LG13.224 ... evm.TU.LG14.924
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_5_RagTag.1460, evm.TU.Scaffold_9_RagTag.1322 ... evm.TU.Scaffold_9_RagTag.1323, evm.TU.Scaffold_9_RagTag.1324
Rhizophoraceae	Carallia pectinifolia	10	nbisL1-mrna-11955, nbisL1-mrna-20845, nbisL1-mrna-25001 ... nbisL1-mrna-25002, nbisL1-mrna-25003, nbisL1-mrna-25004, nbisL1-mrna-25005, nbisL1-mrna-25006, nbisL1-mrna-25009, nbisL1-mrna-25026
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-1141
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-11028, nbisL1-mrna-21299
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000006l.839
Rhizophoraceae	Kandelia obovata	1	Maker00013954
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-10367, nbisL1-mrna-1243
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-15416, nbisL1-mrna-24508, nbisL1-mrna-4758
Salicaceae	Populus euphratica	2	populus_peu01313, populus_peu16965
Solanaceae	Lycium barbarum	34	gene-LOC132606110, gene-LOC132606267, gene-LOC132606516 ... gene-LOC132609230, gene-LOC132609669, gene-LOC132609670, gene-LOC132609671, gene-LOC132609672, gene-LOC132609673, gene-LOC132609674, gene-LOC132616911, gene-LOC132618683, gene-LOC132621803, gene-LOC132622650, gene-LOC132622792, gene-LOC132623899, gene-LOC132624151, gene-LOC132624843, gene-LOC132624873, gene-LOC132624906, gene-LOC132626358, gene-LOC132627453, gene-LOC132627455, gene-LOC132627456, gene-LOC132627457, gene-LOC132627477, gene-LOC132627479, gene-LOC132627480, gene-LOC132627481, gene-LOC132631343, gene-LOC132635942, gene-LOC132644394, gene-LOC132645534, gene-LOC132645654
Solanaceae	Solanum chilense	19	SOLCI000110700, SOLCI000110800, SOLCI000323400 ... SOLCI001957500, SOLCI002521200, SOLCI002521600, SOLCI002711700, SOLCI003174600, SOLCI003664500, SOLCI003664700, SOLCI003664800, SOLCI004772500, SOLCI004943400, SOLCI005373500, SOLCI006481800, SOLCI006728100, SOLCI007137300, SOLCI007137400, SOLCI007296700
Solanaceae	Solanum pennellii	25	gene-LOC107004363, gene-LOC107006701, gene-LOC107008863 ... gene-LOC107009290, gene-LOC107009465, gene-LOC107010438, gene-LOC107015964, gene-LOC107017002, gene-LOC107017003, gene-LOC107017287, gene-LOC107017373, gene-LOC107020226, gene-LOC107023947, gene-LOC107026213, gene-LOC107026864, gene-LOC107026865, gene-LOC107026888, gene-LOC107027319, gene-LOC107027391, gene-LOC107027419, gene-LOC107027448, gene-LOC107027450, gene-LOC107027461, gene-LOC107028109, gene-LOC114075190
Tamaricaceae	Reaumuria soongarica	1	MSTRG.16278_chr09_-
Tamaricaceae	Tamarix chinensis	1	TC07G2267