Basic Information
Locus ID:
Ag3G00199
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
TRM112-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 3486393 | 3486743 | + | Ag3G00199 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.98 | 13,147.06 Da | 41.21 | 96.55 | -0.15 |
Protein Domain:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G22270.1 | Trm112p-like protein. Encodes SMO2 (Small Organ 2). Modulates progression of cell division during organ growth. | 0 |
| RefSeq | XP_017240445.1 | PREDICTED: multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Daucus carota subsp. sativus] | 0 |
| Q8LFJ5 | Multifunctional methyltransferase subunit TRM112 homolog A OS=Arabidopsis thaliana OX=3702 GN=TRM112A PE=1 SV=1 | 0 | |
| TrEMBL | A0A165ZFQ0 | Multifunctional methyltransferase subunit TRM112-like protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_008736 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 17.976803 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 15.474145 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 13.821061 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 14.574776 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 16.269564 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 14.225591 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 9.174251 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 9.077386 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 27.114346 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 35.867954 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 31.457851 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 42.378735 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 36.481396 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 35.807957 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 43.053078 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 49.776169 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 54.823521 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 29.784519 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 34.998085 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 32.235641 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 33.334454 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 40.979755 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 47.038254 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 49.66502 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 56.856289 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 28.414438 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 32.157478 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 36.576366 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 37.377682 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 27.978342 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 22.861486 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 20.037329 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 17.47966 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 42.631145 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 21.468004 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 46.01775 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 43.281151 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 34.885956 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 14.959106 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 12.364602 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 8.250674 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 45.67968 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 37.002792 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 76.218857 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 52.696144 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 71.049889 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 40.717293 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 64.4515 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 36.519638 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 42.140991 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg23897 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_1437, gene_14501 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah003113, Ah023917 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_1g009110, BVRB_5g108590 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg15737, Sbi_jg56529 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg13753 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001822 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51448, Sgl56736 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000004339 |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.1BG0014160, CQ.Regalona.r1.5AG0011220 ... |
| Apiaceae | Apium graveolens | 2 | Ag3G00199, Ag4G02743 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G007010, scaffold002246G000050 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103711248 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1812.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri6G15152 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G22270.1, AT1G78190.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10009116m.g.v1.0, Thhalv10019322m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g19780.v2.2, Sp5g33330.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g030130.2N, BniB03g057540.2N, BniB04g037430.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1345 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1447 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g10570 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0152s00013.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g08640 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG06.1497, evm.TU.LG09.796 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00005999, Pov_00037773 |
| Poaceae | Echinochloa crus-galli | 1 | BH03.4024 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0577830, gene-QOZ80_7BG0609180 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0123800.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_039509 |
| Poaceae | Oryza coarctata | 2 | Oco13G013070, Oco14G013790 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g43020.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G355300 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr24G014960, Chr28G012030 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G322600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG020600, gene_TRIDC2BG024510 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G163100.1.cds1, TraesCS2B02G188900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb109660_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-334 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g5585, Zma_g6883 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG04.1787 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g23030 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.996, evm.TU.Scaffold_8_RagTag.753 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-9491 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13926 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6821 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000002l.756 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010352 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17901, nbisL1-mrna-20028 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20309, nbisL1-mrna-9946 |
| Salicaceae | Populus euphratica | 3 | populus_peu14612, populus_peu14615, populus_peu32275 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627511 |
| Solanaceae | Solanum chilense | 1 | SOLCI003725400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107016102 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_9633, gene_9902 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G2790 |
| Zosteraceae | Zostera marina | 1 | Zosma04g23110.v3.1 |