Basic Information
Locus ID:
Ag3G00176
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Zinc ion binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 3245420 | 3253623 | - | Ag3G00176 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.99 | 61,008.45 Da | 53.06 | 70.94 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07974 | EGF-like domain | 395 | 422 | 1.0E-5 | IPR013111 |
| Pfam | PF01457 | Leishmanolysin | 111 | 207 | 1.9E-11 | IPR001577 |
| SUPERFAMILY | SSF55486 | "Metalloproteases (""zincins""), catalytic domain" | 51 | 359 | 6.74E-40 | - |
| Gene3D | G3DSA:3.10.170.20 | - | 49 | 205 | 4.2E-20 | - |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 363 | 392 | 2.4E-6 | - |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 394 | 425 | 2.7E-7 | - |
| ProSiteProfiles | PS50026 | EGF-like domain profile. | 391 | 423 | 9.984457 | IPR000742 |
| ProSitePatterns | PS00022 | EGF-like domain signature 1. | 411 | 422 | - | IPR000742 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42620.1 | metalloendopeptidases;zinc ion binding. | 0 |
| RefSeq | XP_017248012.1 | PREDICTED: leishmanolysin-like peptidase [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A162AEA1 | EGF-like domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_012756 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 17.153912 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 12.485699 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 17.261303 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 18.322828 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 16.534834 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 12.513815 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 11.68497 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 8.546591 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 44.391167 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 42.962215 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 44.639111 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 47.166294 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 44.058918 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 43.135334 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 16.453524 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 16.702158 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 16.04101 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 20.753614 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 14.080101 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 19.792835 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 19.255787 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 18.884676 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 16.967724 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 16.869341 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 21.577782 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 19.402903 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 21.419016 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 17.715567 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 21.281204 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 3.971613 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 8.532952 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 6.50487 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 9.983288 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 8.120443 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 7.733304 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 4.204717 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.127029 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.915771 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 16.092403 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 10.878307 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 6.438598 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 12.989177 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 12.162383 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 18.921978 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 16.47621 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 16.001898 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 21.13693 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 23.549788 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 25.812582 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 25.194345 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg10621, jg11911, jg22839 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_747 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah037111 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g012970 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg39414, Sbi_jg54923 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14914 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00013977 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl13353, Sgl18568 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015049, gene:ENSEOMG00000035276 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0019910, CQ.Regalona.r1.1BG0006620 |
| Apiaceae | Apium graveolens | 3 | Ag2G00296, Ag3G00176, Ag4G02770 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G000330 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103707501 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.1520.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri10G04244, Ftri18G12673, Ftri9G12610 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G42620.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10022547m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 4 | Sp2g07000.v2.2, SpUn0022_0010.v2.2, SpUn0026_0070.v2.2 ... |
| Brassicaceae | Brassica nigra | 1 | BniB02g060330.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1645 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1766 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno09g07290, gene.Cymno11g03340 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0225s00006.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g05140 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.536 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00026768 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G15822 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.715, BH01.862, CH01.871 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0217580, gene-QOZ80_3BG0262870 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0339720.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_062151, gene-QYE76_062163 |
| Poaceae | Oryza coarctata | 2 | Oco05G022660, Oco06G023520 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g52150.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G093200 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0107559, Pt_Chr0107562, Pt_Chr0107607, Pt_Ctg00228 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G006170, Chr04G027890, Chr07G026810, Chr12G031230 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G103300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG039670, gene_TRIDC4BG009590 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G253000.1, TraesCS4B02G062300.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb056220_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-14963, nbis-gene-16040 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g2874, Zma_g554 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.902, evm.TU.LG23.114 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g06410 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.545, evm.TU.Scaffold_8_RagTag.1064 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-19087, nbisL1-mrna-8995 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10311, nbisL1-mrna-8329 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-15424, nbisL1-mrna-21859 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000002l.539, evm.TU.utg000018l.354 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003786, Maker00011688 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-3030, nbisL1-mrna-5847, nbisL1-mrna-5849 |
| Rhizophoraceae | Rhizophora mangle | 6 | nbisL1-mrna-12473, nbisL1-mrna-12474, nbisL1-mrna-12476 ... |
| Salicaceae | Populus euphratica | 1 | populus_peu31918 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627962 |
| Solanaceae | Solanum chilense | 1 | SOLCI006502500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107017811 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_1932 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G2296 |
| Zosteraceae | Zostera marina | 1 | Zosma01g01150.v3.1 |