halophFGD

Basic Information

Locus ID: Ag3G00169

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Mitogen-activated protein kinase kinase kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	3136324	3139679	-	Ag3G00169

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.66	64,112.02 Da	60.12	76.50	-0.49

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00069	Protein kinase domain	296	556	8.2E-66	IPR000719
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	286	564	1.91E-82	IPR011009
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	275	560	4.9E-80	-
SMART	SM00220	serkin_6	295	556	2.0E-91	IPR000719
ProSiteProfiles	PS50011	Protein kinase domain profile.	295	556	50.293732	IPR000719
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	301	324	-	IPR017441
MobiDBLite	mobidb-lite	consensus disorder prediction	11	29	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	38	-	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K04421 (mitogen-activated protein kinase kinase kinase 3 [EC:2.7.11.25])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G66850.2	-
RefSeq	XP_017246775.1	PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like isoform X2 [Daucus carota subsp. sativus]
Swiss-Prot	Q9C5H5	Mitogen-activated protein kinase kinase kinase 5 OS=Arabidopsis thaliana OX=3702 GN=MAPKKK5 PE=1 SV=1
TrEMBL	A0A165ZCI1	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_012765 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0.903133	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	1.157402	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0.852095	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	0.747327	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	0.919659	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0.550219	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.147624	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.201629	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.219503	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	2.718396	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	1.61201	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	7.128766	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	9.969478	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.117468	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0.337146	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.140328	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.384985	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	2.556031	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	1.359434	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.239351	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.892124	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.12592		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.211561		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.12682		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	10.750133		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	5.713235		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	15.155026		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	6.14546		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.97402		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	5.324532		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.513193	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	3.868501	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	4.089932	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	26.145721	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	7.476832	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.385275	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	14.962602	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.144519	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0.080495	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0.197617	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg11946, jg17463, jg22803, jg40067
Aizoaceae	Mesembryanthemum crystallinum	1	gene_23915
Amaranthaceae	Atriplex hortensis	1	Ah027373
Amaranthaceae	Beta vulgaris	1	BVRB_6g134510
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg12972, Sbi_jg52895
Amaranthaceae	Salicornia europaea	1	Seu_jg8965
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00010262
Amaranthaceae	Suaeda glauca	2	Sgl33986, Sgl39381
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000000322, gene:ENSEOMG00000003387 ... gene:ENSEOMG00000024524
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.6AG0024710, CQ.Regalona.r1.6BG0026130
Anacardiaceae	Pistacia vera	1	pistato.v30045730
Apiaceae	Apium graveolens	2	Ag3G00169, Ag4G02783
Arecaceae	Cocos nucifera	2	COCNU_06G017510, COCNU_14G010470
Arecaceae	Phoenix dactylifera	2	gene-LOC103709183, gene-LOC103709223
Asparagaceae	Asparagus officinalis	2	AsparagusV1_03.2192.V1.1, AsparagusV1_07.2940.V1.1
Asteraceae	Flaveria trinervia	2	Ftri18G13088, Ftri18G32930
Brassicaceae	Arabidopsis thaliana	1	AT5G66850.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10003724m.g.v1.0, Thhalv10015359m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp2g29810.v2.2
Brassicaceae	Brassica nigra	2	BniB04g000300.2N, BniB06g015160.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq05G1280
Casuarinaceae	Casuarina glauca	2	Cgl03G2454, Cgl05G1283
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno01g15450, gene.Cymno09g07250, gene.Cymno11g03230
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate03g05030, gene.Thate06g13170
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-1289, nbisL1-mrna-6621
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG02.2188, evm.TU.LG06.480
Plantaginaceae	Plantago ovata	3	Pov_00023968, Pov_00027665, Pov_00029301
Plumbaginaceae	Limonium bicolor	1	Lb1G05991
Poaceae	Echinochloa crus-galli	5	AH01.10, AH03.106, CH01.604, CH03.159, Contig1201.1
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_3AG0214830, gene-QOZ80_3BG0259980 ... gene-QOZ80_7AG0553280, gene-QOZ80_7BG0584320
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.2HG0155570.1, HORVU.MOREX.r3.5HG0512750.1
Poaceae	Lolium multiflorum	2	gene-QYE76_010032, gene-QYE76_017042
Poaceae	Oryza coarctata	4	Oco05G024400, Oco06G025320, Oco13G000660, Oco14G000710
Poaceae	Oryza sativa	2	LOC_Os03g55560.1, LOC_Os07g02780.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G070400, gene-BS78_02G012200
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0107331, Pt_Chr0107368, Pt_Chr0303383
Poaceae	Sporobolus alterniflorus	6	Chr01G004390, Chr04G029280, Chr06G009870, Chr12G036680 ... Chr12G036730, Chr19G018700
Poaceae	Thinopyrum elongatum	1	Tel5E01G635300
Poaceae	Triticum dicoccoides	4	gene_TRIDC2AG037660, gene_TRIDC2BG040280 ... gene_TRIDC5AG058340, gene_TRIDC5BG062470
Poaceae	Triticum aestivum	4	TraesCS2A02G264600.1, TraesCS2B02G277400.3 ... TraesCS2D02G259300.3, TraesCS5A02G401400.1
Poaceae	Zea mays	3	Zm00001eb058410_P002, Zm00001eb117980_P001 ... Zm00001eb214220_P001
Poaceae	Zoysia japonica	1	nbis-gene-35862
Poaceae	Zoysia macrostachya	3	Zma_g2718, Zma_g408, Zma_g4687
Portulacaceae	Portulaca oleracea	2	evm.TU.LG05.597, evm.TU.LG25.729
Posidoniaceae	Posidonia oceanica	2	gene.Posoc03g28660, gene.Posoc04g06290
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_3_RagTag.326, evm.TU.Scaffold_6_RagTag.1908 ... evm.TU.Scaffold_6_RagTag.1909
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-17232, nbisL1-mrna-566, nbisL1-mrna-651 ... nbisL1-mrna-9323
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-11170, nbisL1-mrna-17122, nbisL1-mrna-4566 ... nbisL1-mrna-558
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-11878, nbisL1-mrna-20630, nbisL1-mrna-20631 ... nbisL1-mrna-6043
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000011l.1163, evm.TU.utg000018l.283 ... evm.TU.utg000019l.1052
Rhizophoraceae	Kandelia obovata	3	Maker00003291, Maker00007682, Maker00012423
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-11443, nbisL1-mrna-15529, nbisL1-mrna-6454
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-17130, nbisL1-mrna-2261, nbisL1-mrna-3183
Salicaceae	Populus euphratica	5	populus_peu14318, populus_peu14326, populus_peu23430 ... populus_peu31954, populus_peu34955
Solanaceae	Lycium barbarum	4	gene-LOC132604112, gene-LOC132622602, gene-LOC132623568 ... gene-LOC132627912
Solanaceae	Solanum chilense	4	SOLCI003883400, SOLCI005181300, SOLCI006709300 ... SOLCI007325700
Solanaceae	Solanum pennellii	4	gene-LOC107005755, gene-LOC107011539, gene-LOC107011869 ... gene-LOC107015984
Tamaricaceae	Reaumuria soongarica	1	gene_2792
Tamaricaceae	Tamarix chinensis	1	TC11G0502
Zosteraceae	Zostera marina	3	Zosma01g00940.v3.1, Zosma06g07030.v3.1, Zosma06g07150.v3.1