Basic Information
Locus ID:
Ag3G00136
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 2704144 | 2705405 | + | Ag3G00136 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.21 | 21,393.28 Da | 44.75 | 86.93 | -0.43 |
Protein Domain:
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24210.1 | F-box family protein. F-box protein that is involved in GA signaling. Regulates seed germination. Component of E3 ubiquitin complex. Interacts with DELLA proteins. | 0 |
| RefSeq | XP_017244153.1 | PREDICTED: F-box protein GID2 [Daucus carota subsp. sativus] | 0 |
| Q9STX3 | F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A162AEW7 | F-box domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_012798 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 25.307682 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 30.615177 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 28.880733 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 30.284004 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 30.663681 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 29.000004 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 33.829571 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 19.887918 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 126.830688 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 131.499435 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 119.581932 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 122.007278 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 113.930817 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 124.743004 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 66.264992 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 58.208733 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 58.709412 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 55.520287 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 61.494499 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 64.858223 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 67.919327 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 87.302872 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 71.374229 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 64.029312 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 73.746696 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 90.068481 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 68.335533 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 75.593414 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 65.631622 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 87.254364 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 112.118126 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 101.276192 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 250.240265 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 166.70723 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 247.249207 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 164.662964 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 124.257355 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 169.775467 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 35.114952 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 26.2001 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 35.195435 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 166.970566 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 186.609802 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 359.491364 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 274.998016 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 196.931564 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 144.687439 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 143.81163 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 114.940651 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 140.216888 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg22744 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6086 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah005984 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg16896, Sbi_jg61426 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg185 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008267 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl24752, Sgl29900 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009276, gene:ENSEOMG00000028349 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0009720, CQ.Regalona.r1.4BG0009940 |
| Apiaceae | Apium graveolens | 2 | Ag3G00136, Ag4G02833 |
| Arecaceae | Cocos nucifera | 3 | COCNU_01G011010, COCNU_11G007530, COCNU_11G007540 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103714146, gene-LOC103718852, gene-LOC120111339 |
| Asteraceae | Flaveria trinervia | 4 | Ftri10G29795, Ftri16G28571, Ftri18G10200, Ftri9G11094 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G24210.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10000501m.g.v1.0, Thhalv10026481m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g22190.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g013000.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G1796, Ceq05G1368 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G1935, Cgl05G1373 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g06710 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g11500 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1226 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.382 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G21150, Lb6G30217 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.2353, BH06.2053, CH07.2234 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0228040.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_023211 |
| Poaceae | Oryza coarctata | 1 | Oco03G013570 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g30250.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G126000, gene-BS78_04G181800 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr06G009040, Chr09G013340, Chr13G009220, Chr15G010600 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel3E01G104000, Tel3E01G104400, Tel3E01G104500 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC3AG006460, gene_TRIDC3AG006490 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3A02G055700.1.cds1, TraesCS3A02G056000.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb121240_P001, Zm00001eb183250_P002 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-29822 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g13763, Zma_g16556 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.683, evm.TU.LG12.1054 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc01g14210, gene.Posoc07g07430, gene.Posoc07g11080 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.44658.7, evm.TU.Scaffold_8_RagTag.1010 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-19218, nbisL1-mrna-8933 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-917 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20705 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000002l.240, add.evm.TU.utg000018l.130 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003535, Maker00010792 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-20058, nbisL1-mrna-20587 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-10044, nbisL1-mrna-24055 |
| Salicaceae | Populus euphratica | 1 | populus_peu32020 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627813 |
| Solanaceae | Solanum chilense | 1 | SOLCI002241800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015670 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_1759 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G2592 |
| Zosteraceae | Zostera marina | 1 | Zosma03g36780.v3.1 |