halophFGD

Basic Information

Locus ID: Ag3G00110

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Phytosulfokines

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	2386301	2387094	-	Ag3G00110

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.19	9,014.17 Da	58.10	74.69	-0.43

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF06404	Phytosulfokine precursor protein (PSK)	32	78	3.0E-9	IPR009438
MobiDBLite	mobidb-lite	consensus disorder prediction	37	59	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	31	59	-	-

Gene Ontology

Biological Process:

GO:0008283 (cell population proliferation)

Molecular Function:

GO:0008083 (growth factor activity)

Cellular Component:

GO:0005576 (extracellular region)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G22860.1	phytosulfokine 2 precursor. Phytosulfokine 2 precursor, coding for a unique plant peptide growth factor.
RefSeq	XP_017246682.1	PREDICTED: phytosulfokines 3-like [Daucus carota subsp. sativus]
Swiss-Prot	Q9FS10	Phytosulfokines OS=Asparagus officinalis OX=4686 GN=PSK PE=1 SV=1
TrEMBL	A0A165ZAV3	Phytosulfokine OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_012820 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	73.951515	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	31.147699	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	12.751946	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	16.016478	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	20.830961	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	1.828429	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	7.173608	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	6.489043	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0.495215	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	2.299799	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0.530165	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	3.812919	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	2.832492	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	4.125017	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	1.233677	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	2.981797	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0.582396	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0.193187	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	4.80108	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	1.501458	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	2.464862	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	3.345228	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.99904	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.321152	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	1.358315	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	1.238224	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.772283	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.481029		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	2.114054		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	14.486964		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.214632		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.560008		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.243568	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.218693	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	24.701717	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	3.729426	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.425229	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	16.618996	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.417478	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	4.770355	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	48.435055	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	86.630119	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	8	jg16480, jg17343, jg26300, jg28589, jg30195, jg31974, jg8174 ... jg39917
Aizoaceae	Mesembryanthemum crystallinum	4	gene_14411, gene_21244, gene_21475, gene_24019
Amaranthaceae	Atriplex hortensis	5	Ah011439, Ah027509, Ah030902, Ah036797, Ah039502
Amaranthaceae	Beta vulgaris	3	BVRB_1g014760, BVRB_6g128430, BVRB_7g160220
Amaranthaceae	Salicornia bigelovii	8	Sbi_jg11884, Sbi_jg13205, Sbi_jg27442, Sbi_jg33177 ... Sbi_jg39641, Sbi_jg46821, Sbi_jg52591, Sbi_jg54694
Amaranthaceae	Salicornia europaea	5	Seu_jg14678, Seu_jg21123, Seu_jg27919, Seu_jg7907 ... Seu_jg9206
Amaranthaceae	Suaeda aralocaspica	4	GOSA_00005048, GOSA_00010082, GOSA_00012288, GOSA_00013214
Amaranthaceae	Suaeda glauca	10	Sgl12556, Sgl17829, Sgl34565, Sgl39979, Sgl55316, Sgl60572 ... Sgl60663, Sgl71394, Sgl74983, Sgl80245
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000002455, gene:ENSEOMG00000028289 ... gene:ENSEOMG00000033950, gene:ENSEOMG00000038678, gene:ENSEOMG00000048031, gene:ENSEOMG00000052607
Amaranthaceae	Chenopodium quinoa	8	CQ.Regalona.r1.1AG0020890, CQ.Regalona.r1.1BG0007320 ... CQ.Regalona.r1.6AG0016160, CQ.Regalona.r1.6AG0026520, CQ.Regalona.r1.7AG0019660, CQ.Regalona.r1.7BG0022300, CQ.Regalona.r1.9AG0010830, CQ.Regalona.r1.9BG0011560
Anacardiaceae	Pistacia vera	1	pistato.v30010920
Apiaceae	Apium graveolens	5	Ag11G04355, Ag3G00067, Ag3G00110, Ag4G01159, Ag6G01297
Arecaceae	Cocos nucifera	4	COCNU_02G009670, COCNU_15G000260, contig69610073G000010 ... scaffold076924G000010
Arecaceae	Phoenix dactylifera	5	gene-LOC103712283, gene-LOC103713684, gene-LOC103717692 ... gene-LOC103719854, gene-LOC120112106
Asparagaceae	Asparagus officinalis	3	AsparagusV1_02.873.V1.1, AsparagusV1_03.788.V1.1 ... AsparagusV1_07.3060.V1.1
Asteraceae	Flaveria trinervia	8	Ftri13G25154, Ftri14G27430, Ftri16G24836, Ftri17G30563 ... Ftri18G14278, Ftri18G24896, Ftri18G32910, Ftri4G15130
Brassicaceae	Arabidopsis thaliana	7	AT1G13590.1, AT2G22860.1, AT2G22942.1, AT3G44735.1 ... AT3G49780.1, AT4G37720.1, AT5G65870.1
Brassicaceae	Eutrema salsugineum	8	Thhalv10000380m.g.v1.0, Thhalv10000381m.g.v1.0 ... Thhalv10002908m.g.v1.0, Thhalv10005224m.g.v1.0, Thhalv10009205m.g.v1.0, Thhalv10010875m.g.v1.0, Thhalv10015130m.g.v1.0, Thhalv10026843m.g.v1.0
Brassicaceae	Schrenkiella parvula	8	Sp1g11970.v2.2, Sp2g28960.v2.2, Sp4g01910.v2.2 ... Sp4g01960.v2.2, Sp5g12310.v2.2, Sp5g16440.v2.2, Sp6g39010.v2.2, Sp7g35370.v2.2
Brassicaceae	Brassica nigra	13	BniB01g020970.2N, BniB02g008530.2N, BniB02g019690.2N ... BniB02g056830.2N, BniB02g088760.2N, BniB03g010010.2N, BniB03g014410.2N, BniB04g000590.2N, BniB05g047860.2N, BniB05g051280.2N, BniB06g014170.2N, BniB06g038310.2N, BniB08g063500.2N
Casuarinaceae	Casuarina equisetifolia	5	Ceq02G1492, Ceq05G0025, Ceq05G0029, Ceq05G1727, Ceq09G0469
Casuarinaceae	Casuarina glauca	4	Cgl02G1548, Cgl05G0026, Cgl05G1729, Cgl09G0505
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno06g00660, gene.Cymno07g10660, gene.Cymno10g09040
Hydrocharitaceae	Thalassia testudinum	4	gene.Thate02g16360, gene.Thate02g30960, gene.Thate06g13670 ... gene.Thate08g21300
Malvaceae	Hibiscus hamabo Siebold & Zucc.	5	nbisL1-mrna-10086, nbisL1-mrna-10116, nbisL1-mrna-10577 ... nbisL1-mrna-5199, nbisL1-mrna-8568
Nitrariaceae	Nitraria sibirica	6	evm.TU.LG01.2130, evm.TU.LG02.2591, evm.TU.LG03.452 ... evm.TU.LG06.313, evm.TU.LG08.631, evm.TU.LG09.759
Plantaginaceae	Plantago ovata	4	Pov_00004911, Pov_00012076, Pov_00015859, Pov_00023754
Plumbaginaceae	Limonium bicolor	5	Lb1G05452, Lb3G16055, Lb3G19955, Lb7G33000, Lb7G33003
Poaceae	Echinochloa crus-galli	18	AH01.4451, AH03.151, AH04.1628, AH04.280, AH05.190, AH05.191 ... BH03.187, BH04.1650, BH04.268, BH05.218, BH05.220, CH01.5061, CH03.242, CH04.1870, CH04.287, CH05.275, CH05.276, Contig192.91
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_3AG0239670, gene-QOZ80_3BG0288350 ... gene-QOZ80_5AG0381370, gene-QOZ80_5BG0428420, gene-QOZ80_9AG0674550, gene-QOZ80_9BG0698350
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.2HG0154460.1, HORVU.MOREX.r3.4HG0394720.1 ... HORVU.MOREX.r3.5HG0459580.1
Poaceae	Lolium multiflorum	3	gene-QYE76_003024, gene-QYE76_003026, gene-QYE76_003158
Poaceae	Oryza coarctata	12	Oco05G007300, Oco05G020090, Oco06G007550, Oco06G020870 ... Oco13G000840, Oco14G000910, Oco20G000080, Oco21G001110, Oco22G001940, Oco22G008400, Oco23G001750, Oco24G001280
Poaceae	Oryza sativa	6	LOC_Os03g12990.1, LOC_Os03g47230.1, LOC_Os07g03200.1 ... LOC_Os11g05190.1, LOC_Os11g35310.1, LOC_Os12g05260.1
Poaceae	Paspalum vaginatum	5	gene-BS78_01G430600, gene-BS78_02G022200 ... gene-BS78_05G047600, gene-BS78_05G168100, gene-BS78_08G022900
Poaceae	Puccinellia tenuiflora	7	Pt_Chr0101837, Pt_Chr0101871, Pt_Chr0103118, Pt_Chr0303450 ... Pt_Chr0303469, Pt_Chr0703128, Pt_Chr0703178
Poaceae	Sporobolus alterniflorus	12	Chr01G028430, Chr07G021380, Chr0G005140, Chr12G011030 ... Chr16G009380, Chr17G008420, Chr19G012060, Chr19G018400, Chr24G002000, Chr27G003890, Chr31G000940, Chr31G006750
Poaceae	Thinopyrum elongatum	4	Tel2E01G471400, Tel4E01G204500, Tel4E01G408000 ... Tel5E01G235800
Poaceae	Triticum dicoccoides	8	gene_TRIDC2AG038200, gene_TRIDC2BG039990 ... gene_TRIDC4AG009190, gene_TRIDC4AG029860, gene_TRIDC4BG021300, gene_TRIDC4BG041650, gene_TRIDC5AG022970, gene_TRIDC5BG023090
Poaceae	Triticum aestivum	12	TraesCS2A02G267200.1, TraesCS2B02G275300.2 ... TraesCS2D02G256900.1, TraesCS4A02G060600.1, TraesCS4A02G186800.1.cds1, TraesCS4B02G131900.1, TraesCS4B02G236000.1, TraesCS4D02G126700.1, TraesCS4D02G237400.1, TraesCS5A02G130400.1, TraesCS5B02G130300.1, TraesCS5D02G137900.1
Poaceae	Zea mays	7	Zm00001eb114080_P001, Zm00001eb139570_P001 ... Zm00001eb196710_P001, Zm00001eb299250_P001, Zm00001eb399450_P001, Zm00001eb406460_P001, Zm00001eb406480_P002
Poaceae	Zoysia japonica	8	nbis-gene-2403, nbis-gene-25654, nbis-gene-27048 ... nbis-gene-35841, nbis-gene-4003, nbis-gene-44240, nbis-gene-45766, nbis-gene-46367
Poaceae	Zoysia macrostachya	9	Zma_g1728, Zma_g17562, Zma_g18070, Zma_g18411, Zma_g18965 ... Zma_g24731, Zma_g25494, Zma_g4107, Zma_g5915
Portulacaceae	Portulaca oleracea	5	evm.TU.LG05.63, evm.TU.LG08.1025, evm.TU.LG11.1173 ... evm.TU.LG22.758, evm.TU.LG25.1271
Posidoniaceae	Posidonia oceanica	3	gene.Posoc03g27770, gene.Posoc03g27780, gene.Posoc03g27800
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_1_RagTag.1999, evm.TU.Scaffold_3_RagTag.1184 ... evm.TU.Scaffold_6_RagTag.1767, evm.TU.Scaffold_7_RagTag.837
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-17391, nbisL1-mrna-19292, nbisL1-mrna-5809 ... nbisL1-mrna-6140
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-3079, nbisL1-mrna-9420, nbisL1-mrna-9763
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-11997, nbisL1-mrna-22087, nbisL1-mrna-3524 ... nbisL1-mrna-6670
Rhizophoraceae	Kandelia candel	5	evm.TU.utg000002l.647, evm.TU.utg000011l.1074 ... evm.TU.utg000015l.249, evm.TU.utg000016l.265, evm.TU.utg000016l.477
Rhizophoraceae	Kandelia obovata	4	Maker00010342, Maker00015258, Maker00016394, Maker00016862
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-15431, nbisL1-mrna-4152, nbisL1-mrna-4154 ... nbisL1-mrna-7651
Rhizophoraceae	Rhizophora mangle	7	nbisL1-mrna-10089, nbisL1-mrna-13943, nbisL1-mrna-1879 ... nbisL1-mrna-22162, nbisL1-mrna-22165, nbisL1-mrna-3318, nbisL1-mrna-434
Salicaceae	Populus euphratica	6	populus_peu08563, populus_peu20929, populus_peu23755 ... populus_peu32081, populus_peu36190, populus_peu36772
Solanaceae	Lycium barbarum	10	gene-LOC132599475, gene-LOC132600211, gene-LOC132604365 ... gene-LOC132604417, gene-LOC132605422, gene-LOC132622813, gene-LOC132623183, gene-LOC132623245, gene-LOC132623608, gene-LOC132633650
Solanaceae	Solanum chilense	9	SOLCI001085000, SOLCI001085100, SOLCI001117400 ... SOLCI003780100, SOLCI004140600, SOLCI005923200, SOLCI005998300, SOLCI006144100, SOLCI007079400
Solanaceae	Solanum pennellii	7	gene-LOC107001773, gene-LOC107004279, gene-LOC107009364 ... gene-LOC107010667, gene-LOC107017382, gene-LOC107022546, gene-LOC107030554
Tamaricaceae	Reaumuria soongarica	3	gene_1787, gene_8379, gene_8607
Zosteraceae	Zostera marina	1	Zosma06g01810.v3.1