Basic Information
Locus ID:
Ag3G00078
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Beach domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 1885470 | 1917721 | + | Ag3G00078 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.26 | 364,320.31 Da | 46.78 | 95.30 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01201 | PH_BEACH | 2394 | 2549 | 3.26407E-19 | IPR023362 |
| CDD | cd06071 | Beach | 2584 | 2859 | 9.77972E-148 | IPR000409 |
| Pfam | PF00400 | WD domain, G-beta repeat | 2996 | 3030 | 3.9E-5 | IPR001680 |
| Pfam | PF13385 | Concanavalin A-like lectin/glucanases superfamily | 1077 | 1247 | 9.4E-9 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 3059 | 3092 | 0.065 | IPR001680 |
| Pfam | PF15787 | Domain of unknown function (DUF4704) | 1320 | 1599 | 1.7E-83 | IPR031570 |
| Pfam | PF14844 | PH domain associated with Beige/BEACH | 2400 | 2543 | 8.0E-14 | IPR023362 |
| Pfam | PF02138 | Beige/BEACH domain | 2583 | 2859 | 7.4E-120 | IPR000409 |
| SUPERFAMILY | SSF50729 | PH domain-like | 2393 | 2546 | 7.99E-18 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 2971 | 3226 | 1.14E-38 | IPR036322 |
| SUPERFAMILY | SSF48371 | ARM repeat | 919 | 1637 | 4.77E-6 | IPR016024 |
| SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 1068 | 1259 | 7.92E-22 | IPR013320 |
| SUPERFAMILY | SSF48371 | ARM repeat | 656 | 1021 | 1.09E-5 | IPR016024 |
| SUPERFAMILY | SSF81837 | BEACH domain | 2578 | 2859 | 8.24E-123 | IPR036372 |
| Gene3D | G3DSA:1.10.1540.10 | BEACH domain | 2572 | 2859 | 4.2E-135 | IPR036372 |
| Gene3D | G3DSA:2.60.120.200 | - | 1065 | 1261 | 8.0E-14 | - |
| Gene3D | G3DSA:2.30.29.30 | - | 2392 | 2543 | 2.9E-19 | IPR011993 |
| Gene3D | G3DSA:2.130.10.10 | - | 2962 | 3238 | 1.3E-36 | IPR015943 |
| SMART | SM00320 | WD40_4 | 3099 | 3139 | 53.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 2992 | 3031 | 4.0E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 3057 | 3096 | 0.051 | IPR001680 |
| SMART | SM01026 | Beach_2 | 2581 | 2859 | 2.0E-198 | IPR000409 |
| SMART | SM00320 | WD40_4 | 3141 | 3179 | 8.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 3182 | 3220 | 1.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 2999 | 3032 | 11.022865 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 2999 | 3040 | 13.449252 | IPR001680 |
| ProSiteProfiles | PS50197 | BEACH domain profile. | 2569 | 2859 | 122.058075 | IPR000409 |
| ProSiteProfiles | PS51783 | BEACH-type PH domain profile. | 2389 | 2546 | 27.537258 | IPR023362 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G58230.2 | - | 0 |
| RefSeq | XP_017246501.1 | PREDICTED: BEACH domain-containing protein B isoform X2 [Daucus carota subsp. sativus] | 0 |
| F4I9T0 | BEACH domain-containing protein B OS=Arabidopsis thaliana OX=3702 GN=BCHB PE=4 SV=1 | 0 | |
| TrEMBL | A0A165Z9U6 | DUF4704 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_012852 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 10.389639 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 8.196272 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 7.025159 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 8.191876 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 8.824328 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 8.742848 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 8.016431 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 8.847941 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 13.822805 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 11.520977 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 13.829742 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 11.501509 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 14.064439 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 9.667843 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 6.89071 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 7.779754 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 7.446219 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 15.201913 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 7.321598 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 15.292529 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 15.360346 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 9.617872 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 9.823308 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 9.251278 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 8.229117 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 15.772774 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 10.940741 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 10.119101 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 13.120054 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 2.372774 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 3.164542 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.860249 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 9.051337 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 4.772393 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 7.460902 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 5.170532 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.888523 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.289764 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 8.648395 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 6.837666 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 4.668001 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 14.236657 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 15.345134 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 18.302023 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 15.319071 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 11.421199 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 16.286192 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 7.031856 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 6.77122 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 6.252708 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg10790 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23020 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023609 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_1g005590, BVRB_8g186960 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg4253, Sbi_jg49553 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg26743, Seu_jg5687 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000967 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl10659, Sgl15910, Sgl15913 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000012635, gene:ENSEOMG00000033156 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.1AG0009940 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30042080 |
| Apiaceae | Apium graveolens | 2 | Ag3G00077, Ag3G00078 |
| Arecaceae | Cocos nucifera | 1 | COCNU_12G000070 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103710848, gene-LOC103724019 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.163.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G18086 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G58230.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10023210m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g05370.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB07g045450.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1062 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G1146, Cgl03G1151 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno09g07400 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g04850 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.238 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00026720 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G01720 |
| Poaceae | Echinochloa crus-galli | 7 | AH06.2704, AH07.454, BH06.2500, BH06.2502, BH06.2503 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2AG0102520, gene-QOZ80_2BG0155830 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.6HG0566040.1, HORVU.MOREX.r3.7HG0734680.1 ... |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_020718, gene-QYE76_036009, gene-QYE76_036010 ... |
| Poaceae | Oryza coarctata | 3 | Oco03G003080, Oco04G003000, Oco11G015200 |
| Poaceae | Oryza sativa | 3 | LOC_Os02g06720.1, LOC_Os02g06725.1, LOC_Os06g46480.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G047100, gene-BS78_10G231000 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0202503, Pt_Chr0202507, Pt_Chr0401235 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr10G020350, Chr10G020360, Chr10G020370, Chr10G020380 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel6E01G289700, Tel7E01G777900 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC6AG018570, gene_TRIDC6BG024550 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS6A02G137700.1, TraesCS6B02G166100.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb207540_P001, Zm00001eb273770_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-29909, nbis-gene-9741 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g14988 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1595, evm.TU.LG10.1315 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g05980 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.830 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-9408 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4929 |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-20554, nbisL1-mrna-20555, nbisL1-mrna-20557 ... |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.226 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003726 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11495 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-17054 |
| Salicaceae | Populus euphratica | 1 | populus_peu32130 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627641 |
| Solanaceae | Solanum chilense | 1 | SOLCI000394400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107017626 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3890 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G2294 |
| Zosteraceae | Zostera marina | 1 | Zosma01g00980.v3.1 |