halophFGD

Basic Information

Locus ID: Ag3G00061

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: belongs to the protein kinase superfamily

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	1593859	1595744	-	Ag3G00061

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.51	54,227.31 Da	48.00	92.92	-0.29

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF07714	Protein tyrosine and serine/threonine kinase	51	308	7.0E-39	IPR001245
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	31	314	3.78E-63	IPR011009
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	28	118	9.1E-16	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	119	322	2.6E-53	-
SMART	SM00220	serkin_6	47	309	5.7E-25	IPR000719
ProSiteProfiles	PS50011	Protein kinase domain profile.	47	309	31.919531	IPR000719
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	161	173	-	IPR008271
MobiDBLite	mobidb-lite	consensus disorder prediction	354	395	-	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K04733 (interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) map04621 (NOD-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G28390.1	Protein kinase superfamily protein.
RefSeq	XP_017244724.1	PREDICTED: serine/threonine-protein kinase-like protein At3g51990 [Daucus carota subsp. sativus]
Swiss-Prot	Q9SGN7	Serine/threonine-protein kinase-like protein At1g28390 OS=Arabidopsis thaliana OX=3702 GN=At1g28390 PE=2 SV=1
TrEMBL	A0A162AEQ4	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_012868 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	2.624791	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	1.450938	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.71272	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.574888	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	1.37929	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.540219	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.721612	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.706629	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	8.092378	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	6.950049	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	8.877427	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	6.762607	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	5.252767	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	5.647102	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	6.825778	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	4.327936	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	10.885453	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	3.753597	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	2.588959	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	3.02975	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	3.239242	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	5.886959	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	5.937156	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	5.625224	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	6.070811	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	1.58843	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	2.650423	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	1.991667	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	2.627573	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.207371		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.148164		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.518027		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	1.151415		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	4.683764		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	2.873436		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	1.051361		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.674426		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.676894		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	3.891578	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	1.246398	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.42429	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	2.441465	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	2.368408	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	2.22081	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	2.259699	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	1.373584	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	4.119939	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	7.934758	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	10.354368	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	7.41282	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg21370, jg26643, jg29003, jg30076
Aizoaceae	Mesembryanthemum crystallinum	3	gene_13405, gene_1472, gene_17559
Amaranthaceae	Atriplex hortensis	2	Ah023749, Ah035671
Amaranthaceae	Beta vulgaris	2	BVRB_1g008140, BVRB_2g028790
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg21719, Sbi_jg22098, Sbi_jg4147, Sbi_jg49657
Amaranthaceae	Salicornia europaea	2	Seu_jg16024, Seu_jg5603
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00001007, GOSA_00008643
Amaranthaceae	Suaeda glauca	5	Sgl10546, Sgl15798, Sgl15799, Sgl62956, Sgl67596
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000015139, gene:ENSEOMG00000016654 ... gene:ENSEOMG00000023234, gene:ENSEOMG00000035801, gene:ENSEOMG00000048616
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.1AG0010960, CQ.Regalona.r1.1BG0014910 ... CQ.Regalona.r1.2AG0017390, CQ.Regalona.r1.2BG0019160
Apiaceae	Apium graveolens	3	Ag3G00061, Ag6G01877, Ag9G00806
Arecaceae	Cocos nucifera	4	COCNU_02G017770, COCNU_13G003690, scaffold003122G000010 ... scaffold005510G000010
Arecaceae	Phoenix dactylifera	4	gene-LOC103697866, gene-LOC103723731, gene-LOC103723825 ... gene-LOC120108027
Asteraceae	Flaveria trinervia	4	Ftri10G11417, Ftri12G13775, Ftri14G20618, Ftri4G00602
Brassicaceae	Arabidopsis thaliana	3	AT1G28390.2, AT3G51990.1, AT5G23170.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10004540m.g.v1.0, Thhalv10007568m.g.v1.0 ... Thhalv10011161m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g24660.v2.2, Sp2g23960.v2.2, Sp5g10280.v2.2
Brassicaceae	Brassica nigra	3	BniB02g076440.2N, BniB03g017030.2N, BniB08g066290.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq03G1231, Ceq05G0815, Ceq09G0423
Casuarinaceae	Casuarina glauca	3	Cgl03G1336, Cgl05G0825, Cgl09G0461
Cymodoceaceae	Cymodocea nodosa	4	gene.Cymno04g06390, gene.Cymno04g12290, gene.Cymno05g07010 ... gene.Cymno09g04180
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate04g12860, gene.Thate06g05310, gene.Thate06g22190
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-1809, nbisL1-mrna-8778
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG03.107, evm.TU.LG06.1558, evm.TU.LG08.807
Plantaginaceae	Plantago ovata	4	Pov_00001974, Pov_00009154, Pov_00015130, Pov_00039329
Plumbaginaceae	Limonium bicolor	4	Lb1G02048, Lb1G04811, Lb4G23414, Lb4G25487
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_1AG0004420, gene-QOZ80_1BG0052820 ... gene-QOZ80_5AG0374850, gene-QOZ80_5BG0421440
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.1HG0058730.1.CDS1 ... HORVU.MOREX.r3.3HG0255960.1.CDS1
Poaceae	Lolium multiflorum	3	gene-QYE76_013599, gene-QYE76_052275, gene-QYE76_052350
Poaceae	Oryza coarctata	3	Oco01G007460, Oco02G007760, Oco10G008710
Poaceae	Oryza sativa	2	LOC_Os01g16230.1, LOC_Os05g32170.1
Poaceae	Paspalum vaginatum	2	gene-BS78_03G113900, gene-BS78_09G130000
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0603797, Pt_Chr0603877
Poaceae	Sporobolus alterniflorus	8	Chr01G021380, Chr02G026750, Chr03G001450, Chr05G004470 ... Chr08G003650, Chr0G003980, Chr18G008030, Chr22G009540
Poaceae	Thinopyrum elongatum	2	Tel1E01G401700, Tel3E01G319800
Poaceae	Triticum dicoccoides	4	gene_TRIDC1AG036500, gene_TRIDC1BG041540 ... gene_TRIDC3AG025630, gene_TRIDC3BG029410
Poaceae	Triticum aestivum	5	TraesCS1A02G242100.1.cds1, TraesCS1D02G242000.1 ... TraesCS3A02G184400.1.cds1, TraesCS3B02G214300.1.cds1, TraesCS3D02G188500.1.cds1
Poaceae	Zea mays	5	Zm00001eb128070_P001, Zm00001eb286990_P001 ... Zm00001eb308360_P001, Zm00001eb333110_P002, Zm00001eb347060_P001
Poaceae	Zoysia japonica	4	nbis-gene-14577, nbis-gene-23707, nbis-gene-24514 ... nbis-gene-32497
Poaceae	Zoysia macrostachya	4	Zma_g26779, Zma_g28167, Zma_g7365, Zma_g9688
Portulacaceae	Portulaca oleracea	4	evm.TU.LG04.1863, evm.TU.LG06.491, evm.TU.LG16.1633 ... evm.TU.LG26.33
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g13720, gene.Posoc01g28530, gene.Posoc04g17530
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_7_RagTag.294, evm.TU.Scaffold_7_RagTag.941 ... evm.TU.Scaffold_8_RagTag.1432
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-18951, nbisL1-mrna-19431, nbisL1-mrna-3744 ... nbisL1-mrna-8524
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-10914, nbisL1-mrna-10915, nbisL1-mrna-16159 ... nbisL1-mrna-18053
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-15233, nbisL1-mrna-6774, nbisL1-mrna-7000
Rhizophoraceae	Kandelia candel	3	add.evm.TU.utg000002l.279, add.evm.TU.utg000018l.74 ... add.evm.TU.utg000028l.81
Rhizophoraceae	Kandelia obovata	3	Maker00003761, Maker00010354, Maker00010608
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-20260, nbisL1-mrna-20523, nbisL1-mrna-22006
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-10186, nbisL1-mrna-18803, nbisL1-mrna-20185
Salicaceae	Populus euphratica	7	populus_peu01915, populus_peu08275, populus_peu14392 ... populus_peu33297, populus_peu33304, populus_peu35897, populus_peu35898
Solanaceae	Lycium barbarum	3	gene-LOC132598667, gene-LOC132627598, gene-LOC132644820
Solanaceae	Solanum chilense	3	SOLCI003070100, SOLCI004089400, SOLCI005947400
Solanaceae	Solanum pennellii	2	gene-LOC107008245, gene-LOC107015640
Tamaricaceae	Reaumuria soongarica	3	STRG.2073_chr01_+, STRG.5869_chr02_-, gene_11034
Tamaricaceae	Tamarix chinensis	3	TC01G0088, TC03G2988, TC04G0226
Zosteraceae	Zostera marina	3	Zosma01g07300.v3.1, Zosma01g39370.v3.1, Zosma01g42830.v3.1