Basic Information
Locus ID:
Ag3G00056
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
AFB5
Description:
Transport inhibitor response 1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 1535802 | 1539137 | + | Ag3G00056 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.27 | 67,634.99 Da | 45.28 | 91.69 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 95 | 141 | 3.0E-22 | IPR041101 |
| Pfam | PF18511 | F-box | 36 | 75 | 8.5E-21 | IPR041567 |
| Pfam | PF13516 | Leucine Rich repeat | 509 | 527 | 0.64 | IPR001611 |
| SUPERFAMILY | SSF81383 | F-box domain | 29 | 69 | 3.4E-5 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 62 | 569 | 2.16E-33 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 32 | 74 | 2.0E-15 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 76 | 605 | 4.8E-160 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 509 | 533 | 33.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 460 | 483 | 31.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 400 | 424 | 27.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 158 | 183 | 240.0 | IPR006553 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G49980.1 | auxin F-box protein 5. | 0 |
| RefSeq | XP_017247457.1 | PREDICTED: transport inhibitor response 1-like protein [Daucus carota subsp. sativus] | 0 |
| Q9LTX2 | Transport inhibitor response 1-like protein OS=Arabidopsis thaliana OX=3702 GN=At5g49980 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5B6ZTA1 | Putative transport inhibitor response 1-like protein OS=Davidia involucrata OX=16924 GN=Din_016616 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 22.719137 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 15.463509 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 13.177546 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 14.317127 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 15.718362 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 10.937909 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 11.934587 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 6.061263 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 63.361919 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 63.661205 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 74.062233 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 60.114182 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 57.122536 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 48.009205 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 35.773743 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 33.813637 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 44.725567 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 45.271503 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 29.030605 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 30.2785 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 38.013695 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 47.879551 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 49.472446 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 37.092373 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 39.405582 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 42.513065 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 43.748463 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 45.345352 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 45.770748 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 12.536643 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 9.922601 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 8.136566 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 34.330307 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 29.546185 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 29.379486 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 29.965858 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 20.103916 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 22.254532 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 24.250805 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 23.302612 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 15.310626 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 16.190453 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 16.457693 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 80.520485 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 87.813797 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 19.804815 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 98.252525 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 50.589924 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 41.917461 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 48.476456 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1471 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023759 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g008060 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001003 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl10541, Sgl15797 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015688, gene:ENSEOMG00000033218 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0011000, CQ.Regalona.r1.1BG0014870 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30041620 |
| Apiaceae | Apium graveolens | 1 | Ag3G00056 |
| Arecaceae | Cocos nucifera | 5 | COCNU_03G007320, COCNU_13G003670, scaffold000319G000020 ... |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103701789, gene-LOC103711008, gene-LOC103719084 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G29688, Ftri9G28513 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G24390.2, AT5G49980.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10024671m.g.v1.0, Thhalv10024672m.g.v1.0 |
| Brassicaceae | Brassica nigra | 2 | BniB05g012810.2N, BniB08g033810.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G1234, Ceq08G0060 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1339 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g02430 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g04640 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.1550 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb0G37894, Lb1G03721 |
| Poaceae | Echinochloa crus-galli | 7 | AH01.4720, AH07.3555, AH07.3558, BH07.3372, CH01.5296 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0146510, gene-QOZ80_2BG0202030 ... |
| Poaceae | Hordeum vulgare | 6 | HORVU.MOREX.r3.4HG0344800.1, HORVU.MOREX.r3.4HG0406350.1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_017453, gene-QYE76_025543, gene-QYE76_028674 |
| Poaceae | Oryza coarctata | 5 | Oco03G022230, Oco04G022870, Oco05G004900, Oco06G005020 ... |
| Poaceae | Oryza sativa | 2 | LOC_Os02g52230.1, LOC_Os03g08850.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G455200, gene-BS78_04G286200 |
| Poaceae | Puccinellia tenuiflora | 6 | Pt_Chr0101407, Pt_Chr0101422, Pt_Chr0203220, Pt_Chr0203225 ... |
| Poaceae | Sporobolus alterniflorus | 8 | Chr01G025800, Chr04G002480, Chr06G001690, Chr07G008760 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel4E01G505400, Tel6E01G561600, Tel7E01G286200 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC4AG000170, gene_TRIDC4BG051700 ... |
| Poaceae | Triticum aestivum | 8 | TraesCS4A02G001800.1, TraesCS4D02G301800.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb006610_P001, Zm00001eb193850_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-2680, nbis-gene-4263, nbis-gene-4265 |
| Poaceae | Zoysia macrostachya | 4 | Zma_g17195, Zma_g1913, Zma_g4268, Zma_g4269 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1860, evm.TU.LG06.495 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g29970 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.945, evm.TU.Scaffold_8_RagTag.798 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-18953, nbisL1-mrna-9440 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-18052, nbisL1-mrna-18087 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-20524, nbisL1-mrna-6777, nbisL1-mrna-6778 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000002l.722, evm.TU.utg000018l.486 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003733, Maker00010607 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-11515, nbisL1-mrna-13043 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-10190, nbisL1-mrna-17021 |
| Salicaceae | Populus euphratica | 2 | populus_peu14389, populus_peu32210 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627596 |
| Solanaceae | Solanum chilense | 1 | SOLCI004089600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107017722 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.8520_chr06_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G2540 |
| Zosteraceae | Zostera marina | 2 | Zosma01g14730.v3.1, Zosma06g17000.v3.1 |