halophFGD

Basic Information

Locus ID: Ag3G00003

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Short Name: CERK1

Description: chitin elicitor receptor kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	529835	530495	-	Ag3G00003

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.75	9,840.11 Da	42.80	78.64	-0.32

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	2	76	6.8E-8	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	24	-	-

KEGG Pathway

KO Term:

K13429 (chitin elicitor receptor kinase 1)

Pathway:

ko04626 (Plant-pathogen interaction) map04626 (Plant-pathogen interaction)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G21630.1	chitin elicitor receptor kinase 1. LysM receptor-like kinase. Essential in the perception and transduction of the chitin oligosaccharide elicitor. Involved in chitin-mediated plant innate immunity. Located in the plasma membrane.
RefSeq	XP_017247766.1	PREDICTED: lysM domain receptor-like kinase 3 [Daucus carota subsp. sativus]
Swiss-Prot	A0A0P0XII1	Chitin elicitor receptor kinase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CERK1 PE=1 SV=1
TrEMBL	A0A175YC78	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_031634 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	17.9729	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	16.670673	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	25.071507	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	24.339481	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	21.198582	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	43.651005	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	28.374117	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	37.080627	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	47.982925	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	47.617718	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	38.261078	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	28.236301	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	38.839638	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	34.145233	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	46.289547	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	42.031273	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	54.22451	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	44.251289	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	52.161171	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	46.190437	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	44.483982	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	59.429665	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	45.334984	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	51.481674	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	45.190186	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	33.229809	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	31.801907	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	30.0369	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	51.843018	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	32.367344		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	34.483227		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	31.869749		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	32.409592		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	42.732365		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	42.432278		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	40.563915		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	38.170986		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	36.873119		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	19.063429	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	33.033283	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	23.101967	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	73.5625	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	61.228294	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	60.780941	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	78.534805	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	95.147263	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	85.778442	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	64.289734	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	52.486076	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	68.073334	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg24149, jg24150, jg24784, jg24787, jg24788
Aizoaceae	Mesembryanthemum crystallinum	3	gene_13154, gene_14558, gene_15256
Amaranthaceae	Atriplex hortensis	3	Ah003109, Ah031413, Ah034497
Amaranthaceae	Beta vulgaris	4	BVRB_2g034370, BVRB_5g108610, BVRB_5g108620, BVRB_7g157730
Amaranthaceae	Salicornia bigelovii	7	Sbi_jg15738, Sbi_jg15739, Sbi_jg19818, Sbi_jg23500 ... Sbi_jg317, Sbi_jg4701, Sbi_jg56530
Amaranthaceae	Salicornia europaea	3	Seu_jg13754, Seu_jg17250, Seu_jg17258
Amaranthaceae	Suaeda aralocaspica	4	GOSA_00001823, GOSA_00001824, GOSA_00005968, GOSA_00028112
Amaranthaceae	Suaeda glauca	6	Sgl51449, Sgl56737, Sgl63653, Sgl68151, Sgl71019, Sgl74610
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000005257, gene:ENSEOMG00000006962 ... gene:ENSEOMG00000019556, gene:ENSEOMG00000020960, gene:ENSEOMG00000020984, gene:ENSEOMG00000021063, gene:ENSEOMG00000022158, gene:ENSEOMG00000024247, gene:ENSEOMG00000048467
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.2AG0014040, CQ.Regalona.r1.2BG0016000 ... CQ.Regalona.r1.5BG0011700, CQ.Regalona.r1.7AG0022160, CQ.Regalona.r1.7BG0024740
Anacardiaceae	Pistacia vera	5	pistato.v30018080, pistato.v30068600, pistato.v30068790 ... pistato.v30068800, pistato.v30068810
Apiaceae	Apium graveolens	9	Ag11G03283, Ag1G01149, Ag1G01159, Ag3G00003, Ag3G00004 ... Ag3G00804, Ag5G01198, Ag8G01136, Ag8G01137
Arecaceae	Cocos nucifera	4	COCNU_02G009440, COCNU_15G005930, COCNU_15G005950 ... scaffold151236G000010
Arecaceae	Phoenix dactylifera	4	gene-LOC103698741, gene-LOC103699816, gene-LOC103712380 ... gene-LOC120107592
Asparagaceae	Asparagus officinalis	2	AsparagusV1_04.1572.V1.1, AsparagusV1_09.1579.V1.1
Asteraceae	Flaveria trinervia	5	Ftri12G15261, Ftri14G28595, FtriNA11225, FtriNA21839 ... FtriNA25937
Brassicaceae	Arabidopsis thaliana	1	AT3G21630.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10020310m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp3g19650.v2.2
Brassicaceae	Brassica nigra	1	BniB01g041530.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq02G2371, Ceq02G2373, Ceq04G1652
Casuarinaceae	Casuarina glauca	2	Cgl02G2452, Cgl04G1827
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno07g08320, gene.Cymno07g08330
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate05g10650
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG04.2106
Plantaginaceae	Plantago ovata	5	Pov_00001237, Pov_00005981, Pov_00005982, Pov_00005983 ... Pov_00005984
Plumbaginaceae	Limonium bicolor	4	Lb2G10353, Lb2G10354, Lb5G29098, Lb7G34504
Poaceae	Echinochloa crus-galli	6	AH03.2545, AH08.2218, BH03.2696, BH08.2347, CH03.2900 ... CH08.2522
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_6AG0541240, gene-QOZ80_8AG0638420 ... gene-QOZ80_8BG0667510, gene-QOZ80_8BG0667520
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.6HG0633710.1.CDS1 ... HORVU.MOREX.r3.6HG0633720.1, HORVU.MOREX.r3.7HG0685350.1, HORVU.MOREX.r3.7HG0685360.1
Poaceae	Lolium multiflorum	2	gene-QYE76_030351, gene-QYE76_030352
Poaceae	Oryza coarctata	3	Oco15G009660, Oco16G012770, Oco17G009100
Poaceae	Oryza sativa	2	LOC_Os08g42580.1, LOC_Os09g33630.2
Poaceae	Paspalum vaginatum	4	gene-BS78_02G237500, gene-BS78_02G237600 ... gene-BS78_07G207700, gene-BS78_07G207800
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0403548
Poaceae	Sporobolus alterniflorus	5	Chr10G015390, Chr11G006930, Chr20G002240, Chr29G001170 ... Chr29G001180
Poaceae	Thinopyrum elongatum	3	Tel6E01G777600, Tel6E01G780300, Tel7E01G463300
Poaceae	Triticum dicoccoides	6	gene_TRIDC6AG061240, gene_TRIDC6AG061330 ... gene_TRIDC6BG068800, gene_TRIDC6BG068830, gene_TRIDC7AG034480, gene_TRIDC7BG025660
Poaceae	Triticum aestivum	7	TraesCS6A02G417900.1, TraesCS6B02G471100.1 ... TraesCS6B02G471400.1, TraesCS6D02G403200.1, TraesCS7A02G264400.1, TraesCS7B02G162500.1, TraesCS7D02G265400.1
Poaceae	Zea mays	2	Zm00001eb037080_P001, Zm00001eb318070_P002
Poaceae	Zoysia japonica	4	nbis-gene-10331, nbis-gene-17552, nbis-gene-26179 ... nbis-gene-42736
Poaceae	Zoysia macrostachya	3	Zma_g23342, Zma_g24452, Zma_g30616
Portulacaceae	Portulaca oleracea	9	evm.TU.LG04.2773, evm.TU.LG04.2774, evm.TU.LG05.953 ... evm.TU.LG07.919, evm.TU.LG15.826, evm.TU.LG16.895, evm.TU.LG16.896, evm.TU.LG16.897, evm.TU.LG25.384
Posidoniaceae	Posidonia oceanica	2	gene.Posoc05g14700, gene.Posoc05g14710
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_12_RagTag.1024 ... evm.TU.Scaffold_5_RagTag.1542, evm.TU.Scaffold_9_RagTag.1366, evm.TU.Scaffold_9_RagTag.1367
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-12029, nbisL1-mrna-20399, nbisL1-mrna-20501 ... nbisL1-mrna-23973
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-11989, nbisL1-mrna-750, nbisL1-mrna-9845
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-10961, nbisL1-mrna-21365, nbisL1-mrna-21366 ... nbisL1-mrna-21722
Rhizophoraceae	Kandelia candel	4	add.evm.TU.utg000027l.8, evm.TU.utg000003l.855 ... evm.TU.utg000006l.887, evm.TU.utg000006l.888
Rhizophoraceae	Kandelia obovata	1	Maker00013486
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-10416, nbisL1-mrna-10417, nbisL1-mrna-20988
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-15485
Salicaceae	Populus euphratica	3	populus_peu16421, populus_peu18442, populus_peu26996
Solanaceae	Lycium barbarum	7	gene-LOC132619342, gene-LOC132619343, gene-LOC132621577 ... gene-LOC132621856, gene-LOC132622436, gene-LOC132622665, gene-LOC132645194
Solanaceae	Solanum chilense	4	SOLCI002883400, SOLCI003381000, SOLCI003904200 ... SOLCI006810400
Solanaceae	Solanum pennellii	4	gene-LOC107010402, gene-LOC107010613, gene-LOC107012101 ... gene-LOC107025340
Tamaricaceae	Reaumuria soongarica	2	STRG.25840_chr11_+, gene_2451
Tamaricaceae	Tamarix chinensis	2	TC03G1390, TC08G0135
Zosteraceae	Zostera marina	4	Zosma05g02860.v3.1, Zosma05g02870.v3.1, Zosma05g02890.v3.1 ... Zosma05g02900.v3.1