Basic Information
Locus ID:
Ag2G03003
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 320512959 | 320516014 | + | Ag2G03003 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.89 | 65,827.75 Da | 48.87 | 74.78 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 137 | 173 | 5.5E-9 | IPR001810 |
| Pfam | PF01344 | Kelch motif | 371 | 402 | 1.2E-4 | IPR006652 |
| Pfam | PF01344 | Kelch motif | 223 | 278 | 3.3E-9 | IPR006652 |
| SUPERFAMILY | SSF81383 | F-box domain | 135 | 199 | 4.06E-12 | IPR036047 |
| SUPERFAMILY | SSF117281 | Kelch motif | 370 | 525 | 1.83E-14 | IPR015915 |
| SUPERFAMILY | SSF117281 | Kelch motif | 185 | 288 | 1.7E-14 | IPR015915 |
| Gene3D | G3DSA:1.20.1280.50 | - | 136 | 168 | 1.0E-6 | - |
| Gene3D | G3DSA:2.120.10.80 | - | 169 | 298 | 1.1E-10 | IPR015915 |
| Gene3D | G3DSA:2.120.10.80 | - | 325 | 562 | 1.5E-12 | IPR015915 |
| SMART | SM00612 | kelc_smart | 370 | 417 | 0.31 | IPR006652 |
| SMART | SM00256 | fbox_2 | 137 | 177 | 1.4E-6 | IPR001810 |
| SMART | SM00612 | kelc_smart | 234 | 291 | 0.16 | IPR006652 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 137 | 177 | 8.914593 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 39 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42350.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_017254153.1 | PREDICTED: F-box/kelch-repeat protein At5g42350-like [Daucus carota subsp. sativus] | 0 |
| Q9FII2 | F-box/kelch-repeat protein At5g42350 OS=Arabidopsis thaliana OX=3702 GN=At5g42350 PE=2 SV=1 | 0 | |
| TrEMBL | A0A164XSL1 | F-box domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_016786 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 7.193199 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 4.319661 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 2.62661 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 3.29755 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 4.032849 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 2.348389 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 2.404514 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.936361 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 20.201696 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 21.043339 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 23.814997 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 21.945734 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 16.754276 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 14.764967 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 13.510406 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 13.660314 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 13.954618 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 11.243203 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 7.985505 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 10.396912 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 10.446736 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 19.880922 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 18.816357 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 17.490988 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 15.628045 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 11.238479 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 11.562352 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 8.650627 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 10.017215 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.668081 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 1.325008 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.327091 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 2.482099 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 7.853826 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 3.8777 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.082152 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.819357 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.003946 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 10.145515 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 4.568006 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.294819 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 2.218624 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 2.441841 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 4.137743 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 4.882754 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 2.027693 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 5.86565 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 12.878062 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 14.693022 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 14.567947 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg11484, jg6037 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8632 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035826 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g014390 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg39824, Sbi_jg54822, Sbi_jg55164 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14503 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00013035, GOSA_00013036 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl12430, Sgl17697 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000019170, gene:ENSEOMG00000034810 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0023370, CQ.Regalona.r1.1BG0000880 |
| Apiaceae | Apium graveolens | 1 | Ag2G03003 |
| Arecaceae | Cocos nucifera | 1 | COCNU_08G009300 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103723526 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.2385.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G27726 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT5G42350.1, AT5G42360.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003171m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g08210.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g018360.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | CeqSG0265 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g07510 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g21220 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8968 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.62 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00037447 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.2871, BH03.3040, CH03.3227 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0526550, gene-QOZ80_6BG0480480 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0504400.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_007097 |
| Poaceae | Oryza coarctata | 2 | Oco17G011470, Oco18G011410 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g38300.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G268300 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0403653, Pt_Chr0700899, Pt_Chr0700905 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr10G006520, Chr11G012800, Chr14G009180, Chr21G009370 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G569200 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC3AG034590, gene_TRIDC5AG051910 ... |
| Poaceae | Triticum aestivum | 4 | TraesCS3A02G231200.1.cds1, TraesCS5A02G355600.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb320670_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-50770, nbis-gene-59182 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g29916 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.487, evm.TU.LG12.1227 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g15240 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.865 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-23790 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9143 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21599 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000027l.56 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00006311 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-20947 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21904 |
| Salicaceae | Populus euphratica | 2 | populus_peu15497, populus_peu33133 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132628230 |
| Solanaceae | Solanum chilense | 1 | SOLCI003211000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107018203 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.31461_chr11_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G2420 |