Basic Information
Locus ID:
Ag2G03001
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Serine threonine-protein kinase endoribonuclease
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 320500563 | 320506752 | + | Ag2G03001 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.14 | 102,250.12 Da | 44.46 | 91.37 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10422 | RNase_Ire1 | 775 | 903 | 3.47528E-63 | - |
| Pfam | PF06479 | Ribonuclease 2-5A | 777 | 903 | 1.0E-43 | IPR010513 |
| Pfam | PF00069 | Protein kinase domain | 489 | 771 | 1.0E-37 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 489 | 787 | 6.34E-56 | IPR011009 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 61 | 230 | 1.44E-8 | IPR011047 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 474 | 558 | 1.1E-27 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 44 | 274 | 5.7E-8 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 595 | 773 | 1.3E-43 | - |
| Gene3D | G3DSA:1.20.1440.180 | KEN domain | 774 | 907 | 2.3E-46 | IPR038357 |
| SMART | SM00220 | serkin_6 | 486 | 771 | 1.8E-34 | IPR000719 |
| SMART | SM00580 | PGNneu | 836 | 890 | 4.8E-17 | - |
| SMART | SM00564 | ire1_9 | 203 | 233 | 27.0 | IPR018391 |
| SMART | SM00564 | ire1_9 | 145 | 176 | 0.098 | IPR018391 |
| ProSiteProfiles | PS51392 | KEN domain profile. | 774 | 905 | 39.405472 | IPR010513 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 486 | 771 | 37.064308 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 633 | 645 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 423 | 454 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G24360.1 | inositol requiring 1-1. | 0 |
| RefSeq | XP_017252901.1 | PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1a-like isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q93VJ2 | Serine/threonine-protein kinase/endoribonuclease IRE1b OS=Arabidopsis thaliana OX=3702 GN=IRE1B PE=2 SV=1 | 0 | |
| TrEMBL | A0A164XSN0 | non-specific serine/threonine protein kinase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_016789 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 14.001952 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 11.129628 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 11.983904 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 11.796968 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 10.590448 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 13.697357 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 10.341044 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 9.831277 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 20.395563 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 19.782713 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 20.152012 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 21.080748 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 21.397625 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 17.36187 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 9.970509 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 10.171445 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 11.9621 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 13.858363 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 11.500349 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 14.663644 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 15.242577 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 11.191874 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 11.877423 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 10.493922 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 13.03375 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 14.680971 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 15.436058 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 14.010448 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 14.396132 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 5.806159 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 7.608764 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 6.010856 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 7.256392 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 8.891282 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 7.772161 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 6.551572 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 4.368075 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 5.156245 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 16.01746 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 12.682179 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 9.854994 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 12.708108 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 14.854654 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 16.563335 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 17.925114 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 12.782764 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 21.839092 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 12.838955 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 15.4579 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 13.929356 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg11487, jg22557, jg30940 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_13359, gene_8630 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah027281, Ah035821 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_1g014280, BVRB_6g135950 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg12652, Sbi_jg39818, Sbi_jg53282, Sbi_jg55159 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg14508, Seu_jg8637 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00010378, GOSA_00010381, GOSA_00013057 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl12425, Sgl17692, Sgl33609, Sgl38915 |
| Amaranthaceae | Chenopodium album | 7 | gene:ENSEOMG00000002717, gene:ENSEOMG00000003675 ... |
| Amaranthaceae | Chenopodium quinoa | 6 | CQ.Regalona.r1.1AG0023440, CQ.Regalona.r1.1BG0000820 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30048150, pistato.v30212310 |
| Apiaceae | Apium graveolens | 2 | Ag2G03001, Ag7G01447 |
| Arecaceae | Cocos nucifera | 1 | scaffold004645G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103704928 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.427.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri13G07527, Ftri17G30686 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT2G17520.1, AT3G11870.1, AT5G24360.2 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10003683m.g.v1.0, Thhalv10022558m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g22960.v2.2, Sp3g30880.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g013840.2N, BniB02g077260.2N |
| Casuarinaceae | Casuarina equisetifolia | 4 | Ceq01G0613, Ceq01G0615, Ceq03G1146, Ceq06G0033 |
| Casuarinaceae | Casuarina glauca | 4 | Cgl01G0703, Cgl01G0706, Cgl01G0707, Cgl06G0034 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g08360 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0170s00010.v1.0, Dusal.1424s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g17200 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-10413, nbisL1-mrna-6926 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.2891, evm.TU.LG06.53 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00023134, Pov_00038732 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G12367, Lb8G36058 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.2947, BH03.3120, CH03.3309 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0566520, gene-QOZ80_7BG0598010 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0627300.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_041428 |
| Poaceae | Oryza coarctata | 2 | Oco13G006960, Oco14G007550 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g28820.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G274400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0304093 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr19G006350, Chr24G005400, Chr27G010510, Chr28G004620 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G678000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG055930, gene_TRIDC6BG065420 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G374700.1, TraesCS6B02G412400.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb104810_P001, Zm00001eb320100_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-1096 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g5114, Zma_g6401 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.310, evm.TU.LG04.445, evm.TU.LG18.667 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g15340 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.14 |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-135, nbisL1-mrna-16936, nbisL1-mrna-16937 ... |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5898 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5828 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.1205 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6614 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2499 |
| Salicaceae | Populus euphratica | 3 | populus_peu15503, populus_peu23244, populus_peu33138 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132621729, gene-LOC132628235 |
| Solanaceae | Solanum chilense | 2 | SOLCI003210600, SOLCI004549600 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107010278, gene-LOC107018272 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_1890, gene_2318 |
| Tamaricaceae | Tamarix chinensis | 2 | TC04G0855, TC04G2414 |
| Zosteraceae | Zostera marina | 1 | Zosma03g21750.v3.1 |