Basic Information
Locus ID:
Ag2G02997
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Outer envelope pore protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 320479365 | 320482720 | - | Ag2G02997 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.56 | 19,367.99 Da | 21.77 | 81.14 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Coils | Coil | Coil | 165 | 167 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76405.2 | 0 | |
| RefSeq | XP_017249826.1 | PREDICTED: outer envelope pore protein 21B, chloroplastic [Daucus carota subsp. sativus] | 0 |
| Q9FPG2 | Outer envelope pore protein 21B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=OEP21B PE=2 SV=1 | 0 | |
| TrEMBL | A0A164XSS0 | Outer envelope pore protein 21B, chloroplastic OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_016792 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 38.217419 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 25.798721 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 23.827894 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 23.504347 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 23.923944 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 31.446188 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 23.167992 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 17.398813 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 47.67355 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 45.642471 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 53.753376 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 54.466705 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 47.422318 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 44.250401 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 14.667163 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 20.440554 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 24.588718 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 31.243589 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 31.51063 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 21.340845 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 24.775751 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 23.681265 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 24.737499 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 25.408663 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 30.566031 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 32.941818 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 28.532692 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 31.958275 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 29.302725 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 19.798178 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 35.244949 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 37.34127 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 40.964211 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 39.820862 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 49.239643 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 22.242685 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 17.488569 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 19.949671 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 58.085468 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 31.966265 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 31.10169 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 29.427353 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 28.14349 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 54.201244 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 47.868893 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 40.60416 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 34.227711 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 56.020844 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 47.786026 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 48.927456 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg22555 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8329 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035808 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g014190 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg39806, Sbi_jg55150 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14533 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00013067 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl12419, Sgl17682 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000016664, gene:ENSEOMG00000034858 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0023500, CQ.Regalona.r1.1BG0000740 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30048080 |
| Apiaceae | Apium graveolens | 1 | Ag2G02997 |
| Arecaceae | Cocos nucifera | 1 | scaffold054021G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103723465 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.1030.V1.1, AsparagusV1_07.2425.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri17G30725, Ftri18G20464 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G20816.1, AT1G76405.2 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10008937m.g.v1.0, Thhalv10019232m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g18510.v2.2, Sp5g31560.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g055320.2N, BniB04g035470.2N, BniB06g049100.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1396 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1528 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno09g00150 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0051s00026.v1.0, Dusal.0051s00027.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g01500 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1409 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.45 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00037459 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G02790, Lb2G12373, Lb2G13626 |
| Poaceae | Echinochloa crus-galli | 4 | AH07.4056, BH07.3869, CH07.3936, Contig1026.16 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0151720, gene-QOZ80_2BG0207090 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0634040.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_002071, gene-QYE76_064928 |
| Poaceae | Oryza coarctata | 2 | Oco01G026200, Oco03G026320 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g58550.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G330700 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0103843, Pt_Chr0703718 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr13G000120 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G789300 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC5BG070100, gene_TRIDC6AG061750 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G420000.1, TraesCS6B02G468300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb259570_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-39727 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g17491 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.321, evm.TU.LG03.478, evm.TU.LG04.431 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g06540 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.1375 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-9169 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8308 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15279 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.205 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002751 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9549 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18745 |
| Salicaceae | Populus euphratica | 1 | populus_peu15513 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132628242 |
| Solanaceae | Solanum chilense | 1 | SOLCI003210000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107018409 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.15232_chr06_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G1133 |
| Zosteraceae | Zostera marina | 2 | Zosma03g35250.v3.1, Zosma06g05130.v3.1 |