halophFGD

Basic Information

Locus ID: Ag2G02987

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Phosphoglycerate kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr2	320212758	320220600	+	Ag2G02987

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.48	75,064.00 Da	40.69	94.98	-0.04

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd02440	AdoMet_MTases	489	602	0.00764791	-
Pfam	PF00162	Phosphoglycerate kinase	90	435	3.8E-56	IPR001576
Pfam	PF02390	Putative methyltransferase	487	637	1.6E-23	IPR003358
SUPERFAMILY	SSF53748	Phosphoglycerate kinase	82	468	1.77E-66	IPR036043
SUPERFAMILY	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases	487	654	1.29E-14	IPR029063
Gene3D	G3DSA:3.40.50.1260	-	260	466	1.4E-36	IPR015824
Gene3D	G3DSA:3.40.50.150	Vaccinia Virus protein VP39	467	665	5.9E-46	-
Gene3D	G3DSA:3.40.50.1260	-	80	257	1.6E-30	IPR015824
ProSiteProfiles	PS51625	SAM-dependent methyltransferase TRMB-type domain profile.	441	662	38.229679	IPR003358
PRINTS	PR00477	Phosphoglycerate kinase family signature	267	286	4.9E-22	IPR001576
PRINTS	PR00477	Phosphoglycerate kinase family signature	386	411	4.9E-22	IPR001576
PRINTS	PR00477	Phosphoglycerate kinase family signature	111	133	4.9E-22	IPR001576
PRINTS	PR00477	Phosphoglycerate kinase family signature	185	200	4.9E-22	IPR001576
PRINTS	PR00477	Phosphoglycerate kinase family signature	244	266	4.9E-22	IPR001576
PRINTS	PR00477	Phosphoglycerate kinase family signature	445	462	4.9E-22	IPR001576
PRINTS	PR00477	Phosphoglycerate kinase family signature	213	235	4.9E-22	IPR001576
PRINTS	PR00477	Phosphoglycerate kinase family signature	90	106	4.9E-22	IPR001576

Gene Ontology

Biological Process:

GO:0006096 (glycolytic process) GO:0006400 (tRNA modification)

Molecular Function:

GO:0004618 (phosphoglycerate kinase activity) GO:0008176 (tRNA (guanine(46)-N7)-methyltransferase activity)

KEGG Pathway

KO Term:

K00927 (phosphoglycerate kinase [EC:2.7.2.3])

Pathway:

ko00010 (Glycolysis / Gluconeogenesis) map00010 (Glycolysis / Gluconeogenesis) ko00710 (Carbon fixation by Calvin cycle) map00710 (Carbon fixation by Calvin cycle) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites) ko01120 (Microbial metabolism in diverse environments) map01120 (Microbial metabolism in diverse environments) ko01200 (Carbon metabolism) map01200 (Carbon metabolism) ko01230 (Biosynthesis of amino acids) map01230 (Biosynthesis of amino acids)

Module:

M00001 (Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate) M00002 (Glycolysis, core module involving three-carbon compounds) M00003 (Gluconeogenesis, oxaloacetate => fructose-6P) M00165 (Reductive pentose phosphate cycle (Calvin cycle)) M00308 (Semi-phosphorylative Entner-Doudoroff pathway, gluconate => glycerate-3P) M00552 (D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P)

Reaction:

R01512 (ATP + 3-Phospho-D-glycerate <=> ADP + 3-Phospho-D-glyceroyl phosphate)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G17660.1	tRNA (guanine-N-7) methyltransferase.
RefSeq	XP_028052943.1	uncharacterized protein LOC114257383 [Camellia sinensis]
Swiss-Prot	A9B312	Phosphoglycerate kinase OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785 / 114-95) OX=316274 GN=pgk PE=3 SV=1
TrEMBL	A0A2R6Q9N3	Phosphoglycerate kinase OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc20451 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	5.160883	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	3.432296	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	2.163779	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	1.799929	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	2.067044	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	2.995291	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	2.247743	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	2.827586	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	4.728425	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	5.454424	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	6.425531	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	6.948589	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	6.463404	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	4.723971	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	1.701661	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	3.399986	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	3.806865	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	3.220172	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	2.821265	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	2.183681	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	4.03035	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	4.84078	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	5.086817	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	4.871097	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	4.23174	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	3.220229	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	3.743741	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	3.282613	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	3.789932	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.699707		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	1.277362		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.396982		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.629926		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	1.613609		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0.856201		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	1.008352		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.41783		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.728591		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	3.389002	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	1.830023	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	1.458869	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	2.283156	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	1.469225	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	7.019833	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	3.041062	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	2.139475	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	3.453188	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	10.480148	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	13.832075	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	12.529964	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg14980
Aizoaceae	Mesembryanthemum crystallinum	1	gene_25359
Amaranthaceae	Atriplex hortensis	1	Ah030458
Amaranthaceae	Beta vulgaris	1	BVRB_7g161710
Amaranthaceae	Chenopodium album	4	gene:ENSEOMG00000006883, gene:ENSEOMG00000008075 ... gene:ENSEOMG00000036971, gene:ENSEOMG00000040777
Amaranthaceae	Chenopodium quinoa	3	CQ.Regalona.r1.7AG0018050, CQ.Regalona.r1.7BG0020340 ... CQ.Regalona.r1.7BG0020350
Anacardiaceae	Pistacia vera	1	pistato.v30273130
Apiaceae	Apium graveolens	1	Ag2G02987
Arecaceae	Cocos nucifera	1	COCNU_07G010790
Arecaceae	Phoenix dactylifera	1	gene-LOC103721309
Asparagaceae	Asparagus officinalis	1	AsparagusV1_04.1766.V1.1
Asteraceae	Flaveria trinervia	1	Ftri6G21770
Casuarinaceae	Casuarina equisetifolia	1	Ceq08G1355
Casuarinaceae	Casuarina glauca	1	Cgl08G1387
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno17g01050
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate01g06930
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG01.1481
Plantaginaceae	Plantago ovata	1	Pov_00006323
Plumbaginaceae	Limonium bicolor	1	Lb0G37234
Poaceae	Echinochloa crus-galli	4	AH01.1963, BH01.2258, BH01.2263, CH01.2357
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_2AG0125800, gene-QOZ80_2BG0181590
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.1HG0038640.1 ... HORVU.MOREX.r3.5HG0448930.1.CDS1
Poaceae	Lolium multiflorum	1	gene-QYE76_013191
Poaceae	Oryza coarctata	1	Oco19G004960
Poaceae	Oryza sativa	1	LOC_Os10g30550.1
Poaceae	Paspalum vaginatum	1	gene-BS78_01G223300
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0502452, Pt_Chr0502456
Poaceae	Sporobolus alterniflorus	2	Chr09G010060, Chr13G015060
Poaceae	Thinopyrum elongatum	1	Tel1E01G261200
Poaceae	Triticum dicoccoides	4	gene_TRIDC1AG021080, gene_TRIDC1BG025560 ... gene_TRIDC2AG036180, gene_TRIDC2AG036560
Poaceae	Triticum aestivum	3	TraesCS1A02G140900.1, TraesCS1B02G157400.1 ... TraesCS1D02G139800.1
Poaceae	Zea mays	1	Zm00001eb047240_P002
Poaceae	Zoysia japonica	1	nbis-gene-48061
Poaceae	Zoysia macrostachya	1	Zma_g16108
Portulacaceae	Portulaca oleracea	2	evm.TU.LG05.852, evm.TU.LG25.475
Posidoniaceae	Posidonia oceanica	1	gene.Posoc10g11900
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_1_RagTag.1536
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-5238
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-21004
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-3924
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000016l.533
Rhizophoraceae	Kandelia obovata	1	Maker00017095
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-7705
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-358
Salicaceae	Populus euphratica	2	populus_peu07922, populus_peu14453
Solanaceae	Lycium barbarum	1	gene-LOC132630015
Solanaceae	Solanum pennellii	1	gene-LOC107031747
Tamaricaceae	Reaumuria soongarica	1	gene_4520
Tamaricaceae	Tamarix chinensis	1	TC02G1912
Zosteraceae	Zostera marina	1	Zosma03g32230.v3.1