halophFGD

Basic Information

Locus ID: Ag2G02950

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Pyruvate kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr2	319483894	319493060	+	Ag2G02950

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.63	57,663.95 Da	31.09	96.17	-0.01

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00224	Pyruvate kinase, barrel domain	30	376	1.5E-94	IPR015793
Pfam	PF02887	Pyruvate kinase, alpha/beta domain	395	522	7.1E-24	IPR015795
SUPERFAMILY	SSF50800	PK beta-barrel domain-like	96	186	1.12E-7	IPR011037
SUPERFAMILY	SSF52935	PK C-terminal domain-like	358	520	1.83E-22	IPR036918
SUPERFAMILY	SSF51621	Phosphoenolpyruvate/pyruvate domain	7	375	1.54E-76	IPR015813
Gene3D	G3DSA:3.40.1380.20	-	371	513	1.9E-150	IPR036918
Gene3D	G3DSA:2.40.33.10	-	96	202	1.9E-150	IPR015806
Gene3D	G3DSA:3.20.20.60	-	30	370	1.9E-150	IPR040442
TIGRFAM	TIGR01064	pyruv_kin: pyruvate kinase	30	516	1.9E-112	IPR001697
PRINTS	PR01050	Pyruvate kinase family signature	348	364	3.6E-44	IPR001697
PRINTS	PR01050	Pyruvate kinase family signature	280	304	3.6E-44	IPR001697
PRINTS	PR01050	Pyruvate kinase family signature	329	347	3.6E-44	IPR001697
PRINTS	PR01050	Pyruvate kinase family signature	85	101	3.6E-44	IPR001697
PRINTS	PR01050	Pyruvate kinase family signature	221	235	3.6E-44	IPR001697
PRINTS	PR01050	Pyruvate kinase family signature	253	279	3.6E-44	IPR001697

Gene Ontology

Biological Process:

GO:0006096 (glycolytic process)

Molecular Function:

GO:0000287 (magnesium ion binding) GO:0003824 (catalytic activity) GO:0004743 (pyruvate kinase activity) GO:0030955 (potassium ion binding)

KEGG Pathway

KO Term:

K00873 (pyruvate kinase [EC:2.7.1.40])

Pathway:

ko00010 (Glycolysis / Gluconeogenesis) map00010 (Glycolysis / Gluconeogenesis) ko00230 (Purine metabolism) map00230 (Purine metabolism) ko00620 (Pyruvate metabolism) map00620 (Pyruvate metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites) ko01120 (Microbial metabolism in diverse environments) map01120 (Microbial metabolism in diverse environments) ko01200 (Carbon metabolism) map01200 (Carbon metabolism) ko01230 (Biosynthesis of amino acids) map01230 (Biosynthesis of amino acids)

Module:

M00001 (Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate) M00002 (Glycolysis, core module involving three-carbon compounds) M00049 (Adenine ribonucleotide biosynthesis, IMP => ADP,ATP) M00050 (Guanine ribonucleotide biosynthesis, IMP => GDP,GTP)

Reaction:

R00200 (ATP + Pyruvate <=> ADP + Phosphoenolpyruvate) R00430 (GTP + Pyruvate <=> GDP + Phosphoenolpyruvate) R01138 (dATP + Pyruvate <=> dADP + Phosphoenolpyruvate) R01858 (dGTP + Pyruvate <=> dGDP + Phosphoenolpyruvate) R02320 (Nucleoside triphosphate + Pyruvate <=> NDP + Phosphoenolpyruvate)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G52990.1	Pyruvate kinase family protein.
RefSeq	XP_017253311.1	PREDICTED: pyruvate kinase 1, cytosolic [Daucus carota subsp. sativus]
Swiss-Prot	B8BJ39	Pyruvate kinase 1, cytosolic OS=Oryza sativa subsp. indica OX=39946 GN=OsI_35105 PE=3 SV=1
TrEMBL	A0A162A0T1	Pyruvate kinase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_017635 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	29.086258	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	27.544804	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	11.694801	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	12.999725	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	11.729335	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	7.28424	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	11.502246	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	8.91997	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	42.887608	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	45.560612	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	50.714771	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	55.630367	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	49.550102	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	42.282848	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	38.142872	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	64.642159	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	62.464787	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	59.406845	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	40.686409	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	70.014923	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	52.036442	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	115.684578	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	134.721878	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	130.008728	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	99.24511	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	107.65873	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	68.934669	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	66.212143	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	108.446358	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	11.443756		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	24.779449		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	18.935673		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	22.221432		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	32.943451		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	20.187225		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	15.111737		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	10.070904		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	11.522581		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	26.041933	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	14.257565	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	10.668701	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	135.181168	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	139.750259	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	24.027645	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	26.099482	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	134.870071	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	49.178295	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	35.918121	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	44.353405	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	47.544594	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	6	jg14503, jg14504, jg15028, jg31985, jg32659, jg3550
Aizoaceae	Mesembryanthemum crystallinum	2	gene_14392, gene_4596
Amaranthaceae	Atriplex hortensis	3	Ah007026, Ah022120, Ah030809
Amaranthaceae	Beta vulgaris	2	BVRB_3g062650, BVRB_7g160680
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg27491, Sbi_jg33228, Sbi_jg35918, Sbi_jg59711 ... Sbi_jg63766
Amaranthaceae	Salicornia europaea	2	Seu_jg24163, Seu_jg7943
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00005650, GOSA_00013019, GOSA_00024114
Amaranthaceae	Suaeda glauca	5	Sgl02246, Sgl21440, Sgl68668, Sgl71366, Sgl74959
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000000151, gene:ENSEOMG00000029320 ... gene:ENSEOMG00000036612, gene:ENSEOMG00000039646, gene:ENSEOMG00000043750, gene:ENSEOMG00000043781
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.3AG0022640, CQ.Regalona.r1.3BG0023370 ... CQ.Regalona.r1.4AG0015520, CQ.Regalona.r1.7AG0019400, CQ.Regalona.r1.7BG0022000
Anacardiaceae	Pistacia vera	3	pistato.v30170160, pistato.v30274520, pistato.v30295450
Apiaceae	Apium graveolens	3	Ag11G04553, Ag2G02950, Ag3G02621
Arecaceae	Cocos nucifera	3	COCNU_03G001910, scaffold004526G000010 ... scaffold007042G000010
Arecaceae	Phoenix dactylifera	3	gene-LOC103696956, gene-LOC103697737, gene-LOC103704838
Asparagaceae	Asparagus officinalis	2	AsparagusV1_02.882.V1.1, AsparagusV1_09.271.V1.1
Asteraceae	Flaveria trinervia	5	Ftri11G31230, Ftri12G08362, Ftri18G02215, Ftri6G04778 ... Ftri9G22291
Brassicaceae	Arabidopsis thaliana	2	AT2G36580.1, AT3G52990.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10010288m.g.v1.0, Thhalv10016506m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp4g18870.v2.2, Sp5g09330.v2.2
Brassicaceae	Brassica nigra	3	BniB06g058090.2N, BniB06g066250.2N, BniB08g067380.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq02G1515, Ceq05G1171
Casuarinaceae	Casuarina glauca	3	Cgl02G1570, Cgl05G1182, Cgl05G1184
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno04g01240, gene.Cymno07g10330, gene.Cymno08g03420
Dunaliellaceae	Dunaliella salina	3	Dusal.0164s00012.v1.0, Dusal.0444s00010.v1.0 ... Dusal.1013s00004.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate06g11500, gene.Thate06g11840, gene.Thate08g08560
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-8580
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.2155, evm.TU.LG02.1190
Plantaginaceae	Plantago ovata	3	Pov_00004952, Pov_00006274, Pov_00040226
Plumbaginaceae	Limonium bicolor	4	Lb2G09778, Lb3G16095, Lb3G19161, Lb3G19295
Poaceae	Echinochloa crus-galli	8	AH04.273, AH04.990, AH05.182, BH04.260, BH04.939, BH05.210 ... CH04.1084, CH05.267
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_5AG0381270, gene-QOZ80_5BG0428320 ... gene-QOZ80_9AG0674470, gene-QOZ80_9AG0678490, gene-QOZ80_9BG0698280, gene-QOZ80_9BG0702120
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.4HG0345500.1, HORVU.MOREX.r3.5HG0459370.1
Poaceae	Lolium multiflorum	3	gene-QYE76_003144, gene-QYE76_064297, gene-QYE76_064309
Poaceae	Oryza coarctata	6	Oco21G001040, Oco21G003200, Oco22G001870, Oco22G004000 ... Oco23G001670, Oco24G001210
Poaceae	Oryza sativa	3	LOC_Os11g05110.1, LOC_Os11g10980.1, LOC_Os12g05110.1
Poaceae	Paspalum vaginatum	3	gene-BS78_05G046700, gene-BS78_08G022200 ... gene-BS78_10G045000
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0103974, Pt_Chr0703114, Pt_Chr0703153, Pt_Chr0704216
Poaceae	Sporobolus alterniflorus	8	Chr04G022040, Chr06G023760, Chr07G021430, Chr17G010520 ... Chr19G012030, Chr27G003930, Chr31G000890, Chr31G003340
Poaceae	Thinopyrum elongatum	2	Tel3E01G781500, Tel5E01G237000
Poaceae	Triticum dicoccoides	5	gene_TRIDC1BG017820, gene_TRIDC4AG032330 ... gene_TRIDC4BG016570, gene_TRIDC5AG022750, gene_TRIDC5BG023180
Poaceae	Triticum aestivum	6	TraesCS4A02G203300.1, TraesCS4B02G107200.4 ... TraesCS4D02G104100.1, TraesCS5A02G131100.1, TraesCS5B02G131000.1, TraesCS5D02G138800.1
Poaceae	Zea mays	3	Zm00001eb168480_P001, Zm00001eb196650_P001 ... Zm00001eb406450_P001
Poaceae	Zoysia japonica	3	nbis-gene-25666, nbis-gene-40164, nbis-gene-46368
Poaceae	Zoysia macrostachya	4	Zma_g17558, Zma_g17777, Zma_g24725, Zma_g25493
Portulacaceae	Portulaca oleracea	8	evm.TU.LG03.2283, evm.TU.LG07.405, evm.TU.LG08.1498 ... evm.TU.LG15.535, evm.TU.LG16.1163, evm.TU.LG17.1331, evm.TU.LG20.1379, evm.TU.LG22.390
Posidoniaceae	Posidonia oceanica	2	gene.Posoc05g15490, gene.Posoc05g23180
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_10_RagTag.1142, evm.TU.Scaffold_2_RagTag.954 ... evm.TU.Scaffold_1_RagTag.1472
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-13437, nbisL1-mrna-4253, nbisL1-mrna-6124
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-1040, nbisL1-mrna-4535
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-21782, nbisL1-mrna-3984, nbisL1-mrna-3987
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000004l.323, evm.TU.utg000009l.927 ... evm.TU.utg000016l.488
Rhizophoraceae	Kandelia obovata	3	Maker00003873, Maker00006164, Maker00016410
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-12584, nbisL1-mrna-16312, nbisL1-mrna-7662
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-21418, nbisL1-mrna-415, nbisL1-mrna-5785
Salicaceae	Populus euphratica	3	populus_peu06154, populus_peu11596, populus_peu20012
Solanaceae	Lycium barbarum	2	gene-LOC132607154, gene-LOC132629927
Solanaceae	Solanum chilense	2	SOLCI000086100, SOLCI003915600
Solanaceae	Solanum pennellii	3	gene-LOC107002489, gene-LOC107004573, gene-LOC107029266
Tamaricaceae	Reaumuria soongarica	4	STRG.1047_chr01_+, STRG.21195_chr08_-, STRG.27523_chr04_- ... STRG.32234_chr09_-
Tamaricaceae	Tamarix chinensis	4	TC00000028, TC02G1398, TC02G2553, TC12G1933
Zosteraceae	Zostera marina	4	Zosma02g00810.v3.1, Zosma02g04450.v3.1, Zosma04g16420.v3.1 ... Zosma05g03520.v3.1