Basic Information
Locus ID:
Ag2G02948
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Leucine-rich repeat receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 319469777 | 319471813 | + | Ag2G02948 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.26 | 59,852.53 Da | 41.51 | 100.92 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 139 | 199 | 1.2E-9 | IPR001611 |
| Pfam | PF12799 | Leucine Rich repeats (2 copies) | 93 | 128 | 3.0E-6 | IPR025875 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 349 | 433 | 8.3E-12 | IPR001245 |
| SUPERFAMILY | SSF52058 | L domain-like | 25 | 207 | 3.78E-34 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 349 | 517 | 3.92E-20 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 23 | 113 | 3.0E-11 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 114 | 232 | 5.9E-32 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 423 | 536 | 6.9E-8 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 315 | 420 | 7.4E-22 | - |
| SMART | SM00369 | LRR_typ_2 | 138 | 161 | 43.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 91 | 118 | 120.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 162 | 185 | 45.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 186 | 210 | 91.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 345 | 543 | 15.227279 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 93 | 115 | 7.319219 | IPR001611 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 94 | 107 | 4.0E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 186 | 199 | 4.0E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 520 | 543 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G36570.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_017253719.1 | PREDICTED: leucine-rich repeat receptor-like protein kinase PXC1 [Daucus carota subsp. sativus] | 0 |
| Q9SJQ1 | Leucine-rich repeat receptor-like protein kinase PXC1 OS=Arabidopsis thaliana OX=3702 GN=PXC1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A164YEB4 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_017634 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 1.245857 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.991792 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.182023 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.594314 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.814782 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.05267 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 11.524583 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 15.26009 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 15.076873 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 9.778378 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 9.580416 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 9.055655 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.485618 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 1.717597 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 4.207411 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 12.735263 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 4.20862 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 6.332358 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 10.062033 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 31.659134 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 39.607464 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 38.028614 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 27.933952 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 13.479939 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 12.663618 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 7.6023 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 18.792131 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.088638 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.623314 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.647069 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 5.505312 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 3.671119 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.206784 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 1.148808 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 1.289545 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 8.154075 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 17.210766 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 19.278669 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 17.020958 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg15031, jg32661, jg3551 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14397 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah030822 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g160640 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg27488, Sbi_jg33224 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg7941 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005647 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl71368, Sgl74961 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008337, gene:ENSEOMG00000036686 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0019430, CQ.Regalona.r1.7BG0022030 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30274540 |
| Apiaceae | Apium graveolens | 2 | Ag2G02948, Ag3G02619 |
| Arecaceae | Cocos nucifera | 2 | scaffold006554G000010, scaffold014006G000020 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103696326, gene-LOC103723838 |
| Asteraceae | Flaveria trinervia | 1 | Ftri12G17426 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G36570.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016353m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g18860.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g023110.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1513 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1568 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g00030 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g16620 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-10899 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2153 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00004949 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb2G09775, Lb2G09776, Lb2G09783, Lb2G09784 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.183, BH05.211, CH05.268 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_5AG0381280, gene-QOZ80_5BG0428330 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0459420.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_003145 |
| Poaceae | Oryza coarctata | 2 | Oco23G001680, Oco24G001220 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g05120.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G047000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0703115, Pt_Chr0703154 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr04G022050, Chr06G023770, Chr07G021420, Chr31G000900 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G236800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG022810, gene_TRIDC5BG023140 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G130900.1, TraesCS5B02G130800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb092850_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-25664 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g24726 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.471, evm.TU.LG04.289 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g23130 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.1470 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-6125 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4533 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-3988 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000016l.487 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016534 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-7661 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-416 |
| Salicaceae | Populus euphratica | 1 | populus_peu11594 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132629925 |
| Solanaceae | Solanum chilense | 1 | SOLCI000085900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107029143 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.234_chr01_+, STRG.27526_chr04_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC00000026, TC02G2550 |
| Zosteraceae | Zostera marina | 1 | Zosma05g03570.v3.1 |