Basic Information
Locus ID:
Ag2G02918
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
WD repeat-containing protein 20-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 319017885 | 319025193 | + | Ag2G02918 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.60 | 58,051.00 Da | 34.88 | 72.80 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 340 | 365 | 0.021 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 293 | 323 | 1.8E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 146 | 505 | 2.75E-38 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 11 | 515 | 4.0E-102 | IPR015943 |
| SMART | SM00320 | WD40_4 | 326 | 365 | 0.013 | IPR001680 |
| SMART | SM00320 | WD40_4 | 210 | 256 | 3.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 284 | 323 | 6.8E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 469 | 506 | 7.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 368 | 420 | 1.8 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 295 | 332 | 8.837541 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 333 | 374 | 9.773251 | IPR001680 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G53390.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_017252788.1 | PREDICTED: WD repeat-containing protein 20 [Daucus carota subsp. sativus] | 0 |
| A1DMI8 | Probable catabolite repression protein creC OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=creC PE=3 SV=1 | 0 | |
| TrEMBL | A0A164YG78 | WD_REPEATS_REGION domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_017711 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 30.106432 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 22.16478 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 19.830744 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 22.209074 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 21.994232 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 21.409489 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 19.647202 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 15.538879 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 31.623642 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 33.49564 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 33.938591 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 34.157539 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 36.42704 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 28.935665 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 23.332699 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 23.625904 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 21.654375 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 24.518885 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 20.383633 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 32.554501 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 32.570526 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 32.238979 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 31.456497 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 25.222252 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 30.465067 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 24.963905 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 24.320709 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 24.69124 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 28.426535 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 14.242039 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 13.11576 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 13.688141 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 34.377285 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 30.423868 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 34.609295 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 23.4282 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 12.634324 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 17.718029 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 18.262445 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 17.809969 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 12.539125 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 56.798458 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 31.423807 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 23.954163 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 24.885092 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 45.071686 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 27.251852 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 30.087336 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 28.292824 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 26.35277 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg32616, jg3460 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14240 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah030309, Ah037762 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_7g162280, BVRB_9g208120 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg2068, Sbi_jg34448, Sbi_jg41882, Sbi_jg48248 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg2702, Seu_jg27589 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00005794, GOSA_00019758 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl71206, Sgl74776, Sgl78580, Sgl78601, Sgl81064, Sgl81077 |
| Amaranthaceae | Chenopodium album | 7 | gene:ENSEOMG00000006999, gene:ENSEOMG00000014944 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.9AG0004980, CQ.Regalona.r1.9AG0005000 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30272390 |
| Apiaceae | Apium graveolens | 1 | Ag2G02918 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G010900, COCNU_15G002570 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103701298, gene-LOC103703215 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_09.755.V1.1, AsparagusV1_10.540.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri11G28790, Ftri12G04607, Ftri12G26588 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G37160.2, AT3G53390.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10010255m.g.v1.0, Thhalv10016480m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g19470.v2.2, Sp5g08950.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB06g066060.2N, BniB08g067800.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq08G1312, Ceq08G1728 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl08G1339, Cgl08G1768 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno07g01570, gene.Cymno08g07550 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0099s00018.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g13590 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1416 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005121 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb4G23120, Lb5G28320, Lb5G28343 |
| Poaceae | Echinochloa crus-galli | 6 | AH04.460, AH05.322, BH04.493, BH05.376, CH04.513, CH05.433 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_5AG0383210, gene-QOZ80_5BG0430100 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.4HG0348510.1, HORVU.MOREX.r3.5HG0455150.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_064623, gene-QYE76_064640 |
| Poaceae | Oryza coarctata | 4 | Oco21G002330, Oco22G003140, Oco23G002850, Oco24G002370 |
| Poaceae | Oryza sativa | 2 | LOC_Os11g07480.1, LOC_Os12g07450.2 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G275100, gene-BS78_08G045800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0103048, Pt_Chr0104141 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr04G023180, Chr06G024940, Chr07G020450, Chr16G010350 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G148400, Tel5E01G221800 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC4AG035350, gene_TRIDC4BG014580 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS4A02G221900.1, TraesCS4B02G094400.3 ... |
| Poaceae | Zea mays | 2 | Zm00001eb091540_P004, Zm00001eb139010_P004 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-25534, nbis-gene-27172, nbis-gene-51492 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g17641, Zma_g18489 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG16.1032, evm.TU.LG20.1452 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g19670 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.1569, evm.TU.Scaffold_2_RagTag.864 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-4338, nbisL1-mrna-5274, nbisL1-mrna-5370 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-18802, nbisL1-mrna-21030 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-3895, nbisL1-mrna-9978 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.873, evm.TU.utg000016l.553 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00006002, Maker00016842 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-12638, nbisL1-mrna-7726 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5870 |
| Salicaceae | Populus euphratica | 3 | populus_peu11704, populus_peu25743, populus_peu25762 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132606899, gene-LOC132630069 |
| Solanaceae | Solanum chilense | 2 | SOLCI000598400, SOLCI006550900 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002432, gene-LOC107031778 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.23002_chr05_+, gene_6759 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G2743, TC07G0687 |
| Zosteraceae | Zostera marina | 1 | Zosma04g14890.v3.1 |