halophFGD

Basic Information

Locus ID: Ag2G02902

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Short Name: UPL4

Description: E3 ubiquitin-protein ligase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr2	318861895	318873494	-	Ag2G02902

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.82	171,346.28 Da	47.10	91.24	-0.21

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00078	HECTc	1142	1534	6.01147E-102	IPR000569
Pfam	PF00632	HECT-domain (ubiquitin-transferase)	1189	1536	2.7E-77	IPR000569
SUPERFAMILY	SSF56204	Hect, E3 ligase catalytic domain	1137	1529	7.32E-92	IPR035983
SUPERFAMILY	SSF48371	ARM repeat	103	522	2.85E-30	IPR016024
Gene3D	G3DSA:3.30.2410.10	Hect, E3 ligase catalytic domain	1419	1536	4.7E-32	-
Gene3D	G3DSA:1.25.10.10	-	111	542	1.7E-44	IPR011989
Gene3D	G3DSA:3.90.1750.10	Hect, E3 ligase catalytic domains	1087	1312	6.4E-39	-
SMART	SM00119	hect_3	1151	1536	5.4E-81	IPR000569
ProSiteProfiles	PS50237	HECT domain profile.	1181	1536	57.466904	IPR000569
MobiDBLite	mobidb-lite	consensus disorder prediction	24	52	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1118	1138	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	53	75	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	19	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	75	-	-
Coils	Coil	Coil	839	859	-	-

Gene Ontology

Molecular Function:

GO:0004842 (ubiquitin-protein transferase activity)

KEGG Pathway

KO Term:

K10590 (E3 ubiquitin-protein ligase TRIP12 [EC:2.3.2.26])

Pathway:

ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G02880.1	ubiquitin-protein ligase 4. encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis.
RefSeq	XP_017252444.1	PREDICTED: E3 ubiquitin-protein ligase UPL4 isoform X1 [Daucus carota subsp. sativus]
Swiss-Prot	Q9LYZ7	E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana OX=3702 GN=UPL4 PE=3 SV=1
TrEMBL	A0A164YGL3	HECT-type E3 ubiquitin transferase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_017728 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	23.687992	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	20.598656	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	23.626272	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	23.720131	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	26.075346	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	25.767862	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	28.598684	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	25.094872	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	23.061386	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	22.192509	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	22.874186	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	21.733707	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	26.122309	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	20.04682	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	9.374535	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	10.205432	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	9.736836	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	17.372585	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	11.395833	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	15.926565	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	22.82762	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	15.085396	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	15.111613	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	15.608383	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	13.057967	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	19.008881	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	13.315046	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	15.162899	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	16.896608	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	3.003599		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	4.682837		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	2.202042		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	11.103111		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	8.358532		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	9.398914		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	5.929391		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	3.101925		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	3.947764		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	9.025035	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	9.117827	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	8.15106	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	13.055079	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	22.278748	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	49.515358	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	44.826145	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	14.279476	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	43.869995	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	19.120766	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	20.947258	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	19.414631	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg26140, jg26141, jg30367, jg3439
Aizoaceae	Mesembryanthemum crystallinum	2	gene_14181, gene_26684
Amaranthaceae	Atriplex hortensis	3	Ah009670, Ah030230, Ah030231
Amaranthaceae	Beta vulgaris	2	BVRB_7g166140, BVRB_9g214150
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg12217, Sbi_jg27583, Sbi_jg32938, Sbi_jg47183
Amaranthaceae	Salicornia europaea	2	Seu_jg21459, Seu_jg7718
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00012158, GOSA_00020435
Amaranthaceae	Suaeda glauca	11	Sgl04704, Sgl09751, Sgl53694, Sgl55448, Sgl56123, Sgl58952 ... Sgl61456, Sgl71552, Sgl75128, Sgl78910, Sgl81371
Amaranthaceae	Chenopodium album	7	gene:ENSEOMG00000007962, gene:ENSEOMG00000018203 ... gene:ENSEOMG00000035897, gene:ENSEOMG00000039848, gene:ENSEOMG00000040251, gene:ENSEOMG00000049829, gene:ENSEOMG00000052485
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.7AG0017020, CQ.Regalona.r1.7BG0002930 ... CQ.Regalona.r1.7BG0019270, CQ.Regalona.r1.9AG0021670
Anacardiaceae	Pistacia vera	3	pistato.v30110200, pistato.v30112070, pistato.v30271920
Apiaceae	Apium graveolens	4	Ag1G00966, Ag2G02902, Ag6G02368, Ag7G01811
Arecaceae	Cocos nucifera	4	COCNU_04G002900, COCNU_07G002550, COCNU_10G001730 ... COCNU_12G006990
Arecaceae	Phoenix dactylifera	4	gene-LOC103702862, gene-LOC103706183, gene-LOC103714627 ... gene-LOC103718136
Asparagaceae	Asparagus officinalis	5	AsparagusV1_02.230.V1.1, AsparagusV1_03.1186.V1.1 ... AsparagusV1_05.427.V1.1, AsparagusV1_07.1545.V1.1, AsparagusV1_Unassigned.626.V1.1
Asteraceae	Flaveria trinervia	3	Ftri11G29139, Ftri4G19903, FtriNA16380
Brassicaceae	Arabidopsis thaliana	2	AT4G38600.1, AT5G02880.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10012430m.g.v1.0, Thhalv10024192m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp6g39710.v2.2, Sp7g37170.v2.2, SpUn0003_0090.v2.2
Brassicaceae	Brassica nigra	4	BniB02g089620.2N, BniB03g015710.2N, BniB05g030930.2N ... BniB08g000890.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq07G1702
Casuarinaceae	Casuarina glauca	1	Cgl07G1848
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno10g09490
Dunaliellaceae	Dunaliella salina	1	Dusal.0067s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate01g33030, gene.Thate02g00190, gene.Thate08g21550
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-3100, nbisL1-mrna-5931
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.1378, evm.TU.LG08.308
Plantaginaceae	Plantago ovata	4	Pov_00001654, Pov_00005142, Pov_00005144, Pov_00007360
Plumbaginaceae	Limonium bicolor	3	Lb2G08531, Lb2G08534, Lb3G17625
Poaceae	Echinochloa crus-galli	13	AH04.969, AH05.2114, AH05.912, AH07.188, AH09.397, BH05.2251 ... BH05.877, BH07.15, BH09.443, BH09.444, CH03.4826, CH05.1005, CH05.2331
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_4AG0324970, gene-QOZ80_4BG0355480 ... gene-QOZ80_5AG0370300, gene-QOZ80_5AG0406890, gene-QOZ80_5BG0417820, gene-QOZ80_5BG0454990
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.1HG0012840.1, HORVU.MOREX.r3.1HG0072880.1 ... HORVU.MOREX.r3.2HG0105170.1, HORVU.MOREX.r3.6HG0539760.1
Poaceae	Lolium multiflorum	7	gene-QYE76_001380, gene-QYE76_009186, gene-QYE76_014261 ... gene-QYE76_038366, gene-QYE76_038367, gene-QYE76_038368, gene-QYE76_059983
Poaceae	Oryza coarctata	5	Oco03G000070, Oco04G000100, Oco09G011700, Oco10G001230 ... Oco10G011670
Poaceae	Oryza sativa	3	LOC_Os02g01170.1, LOC_Os05g03100.1, LOC_Os05g38830.1
Poaceae	Paspalum vaginatum	5	gene-BS78_04G002200, gene-BS78_04G002400 ... gene-BS78_06G049000, gene-BS78_09G024900, gene-BS78_09G170700
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0200521, Pt_Chr0200527, Pt_Chr0305692, Pt_Chr0504683 ... Pt_Chr0504700
Poaceae	Sporobolus alterniflorus	10	Chr01G018920, Chr18G002160, Chr18G011450, Chr22G006240 ... Chr22G016120, Chr23G016950, Chr25G014140, Chr26G002880, Chr28G005860, Chr30G013980
Poaceae	Thinopyrum elongatum	4	Tel1E01G124300, Tel1E01G468100, Tel2E01G144000 ... Tel6E01G022500
Poaceae	Triticum dicoccoides	7	gene_TRIDC1AG008100, gene_TRIDC1AG043160 ... gene_TRIDC1BG010250, gene_TRIDC1BG048970, gene_TRIDC2AG007120, gene_TRIDC2BG008280, gene_TRIDC6AG000450
Poaceae	Triticum aestivum	9	TraesCS1A02G059500.1, TraesCS1A02G288600.1 ... TraesCS1B02G298000.1, TraesCS1D02G287600.1, TraesCS2A02G064700.2, TraesCS2B02G076900.1, TraesCS6A02G003300.1, TraesCS6B02G000300.1, TraesCS6D02G005600.1
Poaceae	Zea mays	7	Zm00001eb063630_P001, Zm00001eb086710_P001 ... Zm00001eb210110_P001, Zm00001eb229270_P002, Zm00001eb265140_P001, Zm00001eb265580_P001, Zm00001eb351670_P003
Poaceae	Zoysia japonica	2	nbis-gene-53293, nbis-gene-53623
Poaceae	Zoysia macrostachya	3	Zma_g20996, Zma_g26333, Zma_g27047
Portulacaceae	Portulaca oleracea	2	evm.TU.LG08.1134, evm.TU.LG22.881
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g36030, gene.Posoc06g09370, gene.Posoc08g05620
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_1_RagTag.2315, evm.TU.Scaffold_2_RagTag.839 ... evm.TU.Scaffold_2_RagTag.98
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-21185, nbisL1-mrna-21212, nbisL1-mrna-4359 ... nbisL1-mrna-5110, nbisL1-mrna-6051
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-11006, nbisL1-mrna-18782, nbisL1-mrna-7932
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-3247, nbisL1-mrna-9356, nbisL1-mrna-9956
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000009l.1177, evm.TU.utg000009l.856 ... evm.TU.utg000016l.67
Rhizophoraceae	Kandelia obovata	3	Maker00005333, Maker00005544, Maker00016262
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-12657, nbisL1-mrna-14132, nbisL1-mrna-4623
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-21149, nbisL1-mrna-22454, nbisL1-mrna-5891
Salicaceae	Populus euphratica	4	populus_peu11739, populus_peu11740, populus_peu36641 ... populus_peu36642
Solanaceae	Lycium barbarum	3	gene-LOC132599324, gene-LOC132606635, gene-LOC132630104
Solanaceae	Solanum chilense	3	SOLCI000383500, SOLCI001507700, SOLCI006583100
Solanaceae	Solanum pennellii	3	gene-LOC107001174, gene-LOC107002180, gene-LOC107031691
Tamaricaceae	Reaumuria soongarica	3	gene_12324, gene_5622, gene_7972
Tamaricaceae	Tamarix chinensis	2	TC02G1852, TC12G0755
Zosteraceae	Zostera marina	3	Zosma01g00220.v3.1, Zosma01g00230.v3.1, Zosma06g11550.v3.1