halophFGD

Basic Information

Locus ID: Ag2G02869

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: PB1 domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr2	318294915	318301256	+	Ag2G02869

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.88	162,398.58 Da	49.99	76.94	-0.53

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd06410	PB1_UP2	161	257	2.454E-34	-
Pfam	PF07714	Protein tyrosine and serine/threonine kinase	1236	1372	1.1E-24	IPR001245
Pfam	PF00564	PB1 domain	171	257	2.7E-10	IPR000270
Pfam	PF07714	Protein tyrosine and serine/threonine kinase	1380	1453	9.1E-18	IPR001245
SUPERFAMILY	SSF54277	CAD & PB1 domains	172	262	6.38E-17	-
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	1215	1453	1.4E-56	IPR011009
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	1227	1320	1.4E-19	-
Gene3D	G3DSA:3.10.20.90	-	176	258	1.2E-7	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	1376	1479	1.7E-25	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	1321	1375	1.9E-12	-
SMART	SM00666	PB1_new	170	259	2.3E-20	IPR000270
SMART	SM00220	serkin_6	1234	1461	6.7E-25	IPR000719
ProSiteProfiles	PS50011	Protein kinase domain profile.	1234	1456	22.336679	IPR000719
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	1359	1371	-	IPR008271
MobiDBLite	mobidb-lite	consensus disorder prediction	535	555	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1454	1480	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	314	345	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	131	151	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	47	68	-	-
Coils	Coil	Coil	228	248	-	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005515 (protein binding) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K04422 (mitogen-activated protein kinase kinase kinase 13 [EC:2.7.11.25])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G46920.1	Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain.
RefSeq	XP_017246903.1	PREDICTED: uncharacterized protein LOC108218467 isoform X2 [Daucus carota subsp. sativus]
Swiss-Prot	A0A2R6XIK6	RAF-like serine/threonine-protein kinase PRAF OS=Marchantia polymorpha OX=3197 GN=PRAF PE=1 SV=1
TrEMBL	A0A165WW34	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014924 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.076813	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.08612	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.194727	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.054413	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0.490107	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0.266917	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0.247097	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	21.828545	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	8.82275	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	6.446027	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.076678	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0.015826	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0.058996	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0.014631	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.047823	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0.022258	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.158191	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.011113	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.027388	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.041474		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	1.45397		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.010835		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.016969		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.018776	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.050589	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.011116	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.080691	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.065626	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0.061019	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0.17981	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0.057916	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg31584
Aizoaceae	Mesembryanthemum crystallinum	1	gene_10572
Amaranthaceae	Atriplex hortensis	1	Ah014190
Amaranthaceae	Beta vulgaris	2	BVRB_8g189770, BVRB_8g192730
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00011096
Amaranthaceae	Suaeda glauca	2	Sgl41857, Sgl46659
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000009375, gene:ENSEOMG00000030482 ... gene:ENSEOMG00000044552
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.8AG0023300, CQ.Regalona.r1.8BG0019070
Anacardiaceae	Pistacia vera	1	pistato.v30179690
Apiaceae	Apium graveolens	6	Ag11G04251, Ag2G02869, Ag3G02723, Ag4G01359, Ag4G02866 ... AgUnG01317
Arecaceae	Cocos nucifera	3	COCNU_01G005630, COCNU_01G010200, COCNU_11G008220
Arecaceae	Phoenix dactylifera	4	gene-LOC103703666, gene-LOC103706458, gene-LOC103715979 ... gene-LOC120110830
Asparagaceae	Asparagus officinalis	3	AsparagusV1_01.94.V1.1, AsparagusV1_05.3319.V1.1 ... AsparagusV1_08.811.V1.1
Asteraceae	Flaveria trinervia	1	Ftri15G11468
Brassicaceae	Arabidopsis thaliana	1	AT3G46920.1
Casuarinaceae	Casuarina equisetifolia	1	Ceq03G2493
Casuarinaceae	Casuarina glauca	1	Cgl03G2630
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno01g06700, gene.Cymno02g05410
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate04g09140
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG07.120
Plantaginaceae	Plantago ovata	1	Pov_00000991
Plumbaginaceae	Limonium bicolor	3	Lb1G03774, Lb3G20127, Lb7G35244
Poaceae	Echinochloa crus-galli	6	AH06.2451, AH06.540, BH06.2249, BH06.587, CH06.2475 ... CH06.598
Poaceae	Eleusine coracana subsp. coracana	7	gene-QOZ80_6AG0511090, gene-QOZ80_6AG0546370 ... gene-QOZ80_6BG0499730, gene-QOZ80_9AG0685970, gene-QOZ80_9BG0712150, gene-QOZ80_9BG0712160, gene-QOZ80_9BG0712170
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.7HG0658560.1, HORVU.MOREX.r3.7HG0744210.1
Poaceae	Lolium multiflorum	2	gene-QYE76_028258, gene-QYE76_036653
Poaceae	Oryza coarctata	4	Oco11G003700, Oco11G013840, Oco12G003700, Oco12G014030
Poaceae	Oryza sativa	2	LOC_Os06g08280.1, LOC_Os06g43840.1
Poaceae	Paspalum vaginatum	2	gene-BS78_10G063900, gene-BS78_10G207400
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0207123, Pt_Chr0401563, Pt_Chr0405273, Pt_Ctg00035
Poaceae	Sporobolus alterniflorus	7	Chr02G030890, Chr05G008600, Chr0G000080, Chr10G019000 ... Chr11G003590, Chr11G021580, Chr21G001950
Poaceae	Thinopyrum elongatum	2	Tel7E01G295500, Tel7E01G881100
Poaceae	Triticum dicoccoides	4	gene_TRIDC7AG017680, gene_TRIDC7AG071830 ... gene_TRIDC7BG007000, gene_TRIDC7BG067230
Poaceae	Triticum aestivum	6	TraesCS7A02G145100.1, TraesCS7A02G511900.1 ... TraesCS7B02G047300.2, TraesCS7B02G423200.2, TraesCS7D02G146400.1, TraesCS7D02G500900.1
Poaceae	Zea mays	3	Zm00001eb268080_P004, Zm00001eb374870_P002 ... Zm00001eb386840_P001
Poaceae	Zoysia japonica	2	nbis-gene-40901, nbis-gene-5019
Poaceae	Zoysia macrostachya	2	Zma_g29222, Zma_g33143
Portulacaceae	Portulaca oleracea	2	evm.TU.LG04.1104, evm.TU.LG05.1648
Posidoniaceae	Posidonia oceanica	2	gene.Posoc02g23910, gene.Posoc03g12130
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_10_RagTag.114, evm.TU.Scaffold_4_RagTag.2226
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-25248
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-13162, nbisL1-mrna-21292
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-16550, nbisL1-mrna-16551, nbisL1-mrna-16552 ... nbisL1-mrna-4977
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000008l.1308
Rhizophoraceae	Kandelia obovata	1	Maker00000803
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-1875, nbisL1-mrna-23539
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-22261
Salicaceae	Populus euphratica	3	populus_peu05652, populus_peu05653, populus_peu12286
Solanaceae	Lycium barbarum	1	gene-LOC132603070
Solanaceae	Solanum chilense	1	SOLCI007338600
Solanaceae	Solanum pennellii	1	gene-LOC107026002
Tamaricaceae	Reaumuria soongarica	1	gene_8132
Tamaricaceae	Tamarix chinensis	1	TC10G1133
Zosteraceae	Zostera marina	1	Zosma03g01840.v3.1