Basic Information
Locus ID:
Ag2G02812
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Protein of unknown function (DUF1644)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 317292540 | 317295996 | - | Ag2G02812 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.57 | 50,813.48 Da | 53.20 | 73.09 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05903 | PPPDE putative peptidase domain | 276 | 390 | 2.4E-35 | IPR008580 |
| Pfam | PF07800 | Protein of unknown function (DUF1644) | 1 | 157 | 4.0E-49 | IPR012866 |
| Gene3D | G3DSA:3.90.1720.30 | PPPDE domains | 260 | 402 | 9.3E-37 | IPR042266 |
| SMART | SM01179 | DUF862_2a | 263 | 394 | 4.9E-35 | IPR008580 |
| ProSiteProfiles | PS51858 | PPPDE domain profile. | 255 | 393 | 47.270485 | IPR008580 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 224 | 245 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25910.1 | Protein of unknown function (DUF1644). | 0 |
| RefSeq | XP_017248770.1 | PREDICTED: uncharacterized protein LOC108219772 [Daucus carota subsp. sativus] | 0 |
| Q93VG8 | DeSI-like protein At4g17486 OS=Arabidopsis thaliana OX=3702 GN=At4g17486 PE=2 SV=1 | 0 | |
| TrEMBL | A0A164YJC4 | Zinc finger, RING/FYVE/PHD-type OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_017840 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 15.154442 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 8.619156 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 8.812393 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 8.407889 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 8.748801 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 7.141963 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 9.422402 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 7.233674 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 41.830231 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 35.136932 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 37.358318 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 41.551796 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 39.581406 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 39.885204 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 18.771107 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 18.918886 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 18.124483 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 25.067339 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 19.905811 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 20.352547 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 24.366539 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 26.502186 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 23.756907 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 25.706432 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 25.306952 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 19.69483 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 21.968582 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 19.509708 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 21.762209 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 21.869476 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 27.760309 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 27.356918 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 26.289602 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 33.718102 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 31.224285 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 25.075624 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 19.214752 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 20.642672 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 16.181578 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 11.242311 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 7.904666 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 34.838955 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 29.405788 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 22.762753 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 24.776909 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 33.438324 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 26.474657 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 28.589466 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 24.34915 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 25.112532 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg13516 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10662 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014421 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g195060 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg40782, Sbi_jg50762 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2316 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00007914 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl42088, Sgl46861 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010736, gene:ENSEOMG00000030392 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0021210, CQ.Regalona.r1.8BG0021160 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30127680, pistato.v30128720, pistato.v30255580 |
| Apiaceae | Apium graveolens | 2 | Ag2G02812, Ag4G01532 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G000300, COCNU_14G000150 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103698893, gene-LOC103721295 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.710.V1.1 |
| Asteraceae | Flaveria trinervia | 5 | Ftri14G22007, Ftri15G24297, Ftri3G24700, Ftri4G22677 ... |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G25910.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10004489m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g15150.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g066540.2N, BniB04g008160.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq04G0557, Ceq06G0667 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl04G0662, Cgl06G0691 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g32710 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-101 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.440, evm.TU.LG07.996 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00000906, Pov_00005446, Pov_00015464 |
| Poaceae | Echinochloa crus-galli | 5 | AH02.2314, AH02.2315, AH06.1438, BH02.2421, CH02.2598 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0024280, gene-QOZ80_1BG0074970 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0271250.2.CDS2 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_053754 |
| Poaceae | Oryza coarctata | 2 | Oco01G014420, Oco02G014690 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g42700.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G193300 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G015580, Chr03G010970, Chr05G018230, Chr08G011120 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G376700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG032850, gene_TRIDC3BG037340 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G219400.1.cds1, TraesCS3B02G249800.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb161920_P001, Zm00001eb358060_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-29264, nbis-gene-29517 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g10647, Zma_g8205 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG23.1160 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g15660 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_10_RagTag.355, evm.TU.Scaffold_4_RagTag.1985 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-13186, nbisL1-mrna-13214 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-15028, nbisL1-mrna-3725 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-16758, nbisL1-mrna-4763 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000008l.427, evm.TU.utg000033l.237 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00001376, Maker00015080 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-22492, nbisL1-mrna-23489 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-14729, nbisL1-mrna-21017 |
| Salicaceae | Populus euphratica | 2 | populus_peu05086, populus_peu09174 |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132598647, gene-LOC132601670, gene-LOC132603657 ... |
| Solanaceae | Solanum chilense | 3 | SOLCI001600100, SOLCI004505400, SOLCI004752900 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107005795, gene-LOC107007308, gene-LOC107021203 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.1604_chr01_-, STRG.3625_chr02_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC10G1672, TC12G1219 |