halophFGD

Basic Information

Locus ID: Ag2G02796

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: transcriptional co-repressor

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr2	316473152	316481047	-	Ag2G02796

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.07	78,879.77 Da	41.03	70.18	-0.62

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00200	WD40	432	698	4.65939E-49	-
Pfam	PF00400	WD domain, G-beta repeat	465	499	1.6E-4	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	591	623	5.0E-4	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	431	457	0.012	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	507	534	0.081	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	430	702	2.93E-50	IPR036322
Gene3D	G3DSA:2.130.10.10	-	261	556	1.9E-32	IPR015943
Gene3D	G3DSA:2.130.10.10	-	557	704	2.9E-19	IPR015943
SMART	SM00320	WD40_4	503	543	1.6E-4	IPR001680
SMART	SM00320	WD40_4	419	457	0.0069	IPR001680
SMART	SM00320	WD40_4	546	581	130.0	IPR001680
SMART	SM00320	WD40_4	585	623	7.7E-5	IPR001680
SMART	SM00320	WD40_4	460	499	8.5E-7	IPR001680
SMART	SM00320	WD40_4	629	668	10.0	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	510	552	9.639578	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	425	457	9.004632	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	467	502	10.574686	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	467	508	12.981398	IPR001680
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	486	500	-	IPR019775
MobiDBLite	mobidb-lite	consensus disorder prediction	325	356	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	282	317	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	265	356	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G32551.1	LisH dimerisation motif;WD40/YVTN repeat-like-containing domain. LEUNIG regulates floral organ identity,gynoecium and ovule development. Negatively regulates AGAMOUS . Encodes a glutamine-rich protein with seven WD repeats similar to transcriptional corepressors.
RefSeq	XP_017250165.1	PREDICTED: transcriptional corepressor LEUNIG-like isoform X2 [Daucus carota subsp. sativus]
Swiss-Prot	Q9FUY2	Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana OX=3702 GN=LUG PE=1 SV=2
TrEMBL	A0A164YJN2	LisH domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_017857 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	3.971038	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	2.560366	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	6.906128	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	6.036399	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	6.224046	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	11.00737	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	10.031401	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	15.379919	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	3.287972	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	2.9171	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	3.078613	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	4.609066	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	2.231566	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	2.064404	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.056172	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0.117558	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0.108665	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0.047372	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.153241	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	1.091016	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.308832	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.737748	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.197978	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.212085	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.390729	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.112365		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.23149		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.082497		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.12718		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	2.201996		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0.19515		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.103279		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.118474		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.783133	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.378592	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.10393	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.257783	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0.464357	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.34263	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.153117	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.701954	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	3.897967	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	4.960264	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	5.850337	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg16251, jg20280, jg22059, jg8611
Aizoaceae	Mesembryanthemum crystallinum	2	gene_308, gene_6472
Amaranthaceae	Atriplex hortensis	1	Ah028258
Amaranthaceae	Beta vulgaris	2	BVRB_7g167480, BVRB_8g183000
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg26043, Sbi_jg26535, Sbi_jg34031, Sbi_jg56959 ... Sbi_jg9889
Amaranthaceae	Salicornia europaea	2	Seu_jg15064, Seu_jg18834
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00011930, GOSA_00017054
Amaranthaceae	Suaeda glauca	4	Sgl45950, Sgl50646, Sgl73822, Sgl77324
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000005931, gene:ENSEOMG00000037452 ... gene:ENSEOMG00000041460
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.7AG0010420, CQ.Regalona.r1.7BG0012500 ... CQ.Regalona.r1.8AG0005430, CQ.Regalona.r1.8BG0005590
Anacardiaceae	Pistacia vera	2	pistato.v30014570, pistato.v30241180
Apiaceae	Apium graveolens	3	Ag10G00753, Ag2G01249, Ag2G02796
Arecaceae	Cocos nucifera	4	COCNU_07G000990, COCNU_08G011640, COCNU_09G009570 ... COCNU_10G000720
Arecaceae	Phoenix dactylifera	4	gene-LOC103703910, gene-LOC103706939, gene-LOC103711896 ... gene-LOC103716258
Asparagaceae	Asparagus officinalis	2	AsparagusV1_04.166.V1.1, AsparagusV1_07.1976.V1.1
Asteraceae	Flaveria trinervia	4	Ftri10G04211, Ftri12G14860, Ftri15G01661, Ftri4G09309
Brassicaceae	Arabidopsis thaliana	1	AT2G32700.7
Brassicaceae	Eutrema salsugineum	1	Thhalv10016303m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp4g15040.v2.2, SpUn0199_0030.v2.2
Brassicaceae	Brassica nigra	3	BniB01g011410.2N, BniB06g021800.2N, BniB08g020560.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq06G2005, Ceq07G0750
Casuarinaceae	Casuarina glauca	2	Cgl06G2114, Cgl07G0795
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno10g00390
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate03g06810
Malvaceae	Hibiscus hamabo Siebold & Zucc.	5	nbisL1-mrna-5394, nbisL1-mrna-6384, nbisL1-mrna-956 ... nbisL1-mrna-9750, nbisL1-mrna-9751
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG04.1547, evm.TU.LG11.588, evm.TU.LG11.589
Plantaginaceae	Plantago ovata	5	Pov_00012969, Pov_00015092, Pov_00024507, Pov_00024510 ... Pov_00031791
Plumbaginaceae	Limonium bicolor	1	Lb4G23999
Poaceae	Echinochloa crus-galli	6	AH01.649, AH07.3919, BH01.73, BH07.3726, CH07.3787 ... CH09.3263
Poaceae	Eleusine coracana subsp. coracana	5	gene-QOZ80_1AG0009880, gene-QOZ80_1BG0058470 ... gene-QOZ80_2AG0150070, gene-QOZ80_2BG0205530, gene-QOZ80_3AG0207350
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.5HG0537790.1, HORVU.MOREX.r3.6HG0628510.1
Poaceae	Lolium multiflorum	2	gene-QYE76_026351, gene-QYE76_026670
Poaceae	Oryza coarctata	6	Oco03G025040, Oco04G025520, Oco05G029570, Oco06G030530 ... Oco07G010450, Oco08G010220
Poaceae	Oryza sativa	3	LOC_Os02g56880.1, LOC_Os03g64300.1, LOC_Os04g43130.1
Poaceae	Paspalum vaginatum	3	gene-BS78_01G001500, gene-BS78_03G081900 ... gene-BS78_04G316500
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0106930, Pt_Chr0106931, Pt_Chr0604270, Pt_Chr0604343
Poaceae	Sporobolus alterniflorus	8	Chr01G000040, Chr04G033050, Chr07G032170, Chr09G016760 ... Chr0G014110, Chr12G038290, Chr13G001010, Chr15G000990
Poaceae	Thinopyrum elongatum	1	Tel5E01G904500
Poaceae	Triticum dicoccoides	4	gene_TRIDC5BG083790, gene_TRIDC6AG057060 ... gene_TRIDC6BG066500, gene_TRIDC7BG000320
Poaceae	Triticum aestivum	8	TraesCS5B02G568500.2, TraesCS5D02G560700.2 ... TraesCS6A02G383400.1, TraesCS6B02G422600.1, TraesCS6B02G422700.1, TraesCS6D02G368200.1, TraesCS6D02G368300.1, TraesCS7B02G003100.1
Poaceae	Zea mays	2	Zm00001eb065280_P001, Zm00001eb258660_P001
Poaceae	Zoysia japonica	2	nbis-gene-13185, nbis-gene-8342
Poaceae	Zoysia macrostachya	3	Zma_g14684, Zma_g17395, Zma_g8
Portulacaceae	Portulaca oleracea	4	evm.TU.LG01.35, evm.TU.LG03.1014, evm.TU.LG04.712 ... evm.TU.LG12.716
Posidoniaceae	Posidonia oceanica	2	gene.Posoc06g01030, gene.Posoc06g19410
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_12_RagTag.838, evm.TU.Scaffold_12_RagTag.839 ... evm.TU.Scaffold_3_RagTag.1369, evm.TU.Scaffold_5_RagTag.1202, evm.TU.Scaffold_6_RagTag.974
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-11670, nbisL1-mrna-15693, nbisL1-mrna-1695
Rhizophoraceae	Ceriops tagal	6	nbisL1-mrna-12871, nbisL1-mrna-18194, nbisL1-mrna-20549 ... nbisL1-mrna-3654, nbisL1-mrna-4048, nbisL1-mrna-9076
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-11247, nbisL1-mrna-18274, nbisL1-mrna-21576 ... nbisL1-mrna-2616
Rhizophoraceae	Kandelia candel	4	evm.TU.utg000006l.697, evm.TU.utg000011l.616 ... evm.TU.utg000019l.416, evm.TU.utg000027l.132
Rhizophoraceae	Kandelia obovata	6	Maker00001630, Maker00006284, Maker00006302, Maker00006307 ... Maker00007482, Maker00013031
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-10624, nbisL1-mrna-12239, nbisL1-mrna-15147 ... nbisL1-mrna-9846
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-18131, nbisL1-mrna-19900, nbisL1-mrna-21933 ... nbisL1-mrna-4366
Salicaceae	Populus euphratica	4	populus_peu04067, populus_peu10049, populus_peu30918 ... populus_peu34901
Solanaceae	Lycium barbarum	7	gene-LOC132607240, gene-LOC132607261, gene-LOC132610110 ... gene-LOC132622306, gene-LOC132622484, gene-LOC132640583, gene-LOC132640650
Solanaceae	Solanum chilense	3	SOLCI001175500, SOLCI004650700, SOLCI005438600
Solanaceae	Solanum pennellii	4	gene-LOC107011710, gene-LOC107023312, gene-LOC107028047 ... gene-LOC107031289
Tamaricaceae	Reaumuria soongarica	1	gene_7164
Tamaricaceae	Tamarix chinensis	1	TC01G0621
Zosteraceae	Zostera marina	3	Zosma01g38480.v3.1, Zosma01g38490.v3.1, Zosma05g22500.v3.1