Basic Information
Locus ID:
Ag2G02778
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
LRR receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 315634386 | 315638426 | + | Ag2G02778 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.24 | 94,086.51 Da | 30.14 | 95.67 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 376 | 395 | 1.4 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 549 | 842 | 1.7E-34 | IPR001245 |
| Pfam | PF13855 | Leucine rich repeat | 79 | 123 | 1.4E-8 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 42 | 419 | 4.65E-60 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 522 | 844 | 5.12E-63 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 30 | 176 | 2.9E-35 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 323 | 435 | 1.4E-19 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 252 | 322 | 1.9E-12 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 177 | 251 | 4.7E-12 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 505 | 620 | 6.6E-29 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 621 | 851 | 4.8E-49 | - |
| SMART | SM00365 | LRR_sd22_2 | 87 | 120 | 26.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 280 | 303 | 140.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 352 | 374 | 59.0 | - |
| SMART | SM00369 | LRR_typ_2 | 230 | 253 | 380.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 158 | 182 | 4.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 87 | 109 | 0.012 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 110 | 134 | 50.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 352 | 376 | 22.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 545 | 851 | 34.152706 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 354 | 376 | 7.180607 | IPR001611 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 89 | 110 | 7.865969 | IPR001611 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 90 | 103 | 6.3E-6 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 352 | 365 | 6.3E-6 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G24230.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_017254197.1 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 isoform X1 [Daucus carota subsp. sativus] | 0 |
| C0LGK9 | Probable LRR receptor-like serine/threonine-protein kinase At2g24230 OS=Arabidopsis thaliana OX=3702 GN=At2g24230 PE=1 SV=1 | 0 | |
| TrEMBL | A0A164YKT9 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_017906 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 1.004165 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 1.425629 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.850225 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.927146 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.883574 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.560919 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.508132 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.438425 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 7.684706 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 7.338991 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 7.748343 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 8.116616 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 5.460344 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 4.412659 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.487844 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 1.049022 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 1.377958 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 1.922905 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.962868 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 1.289894 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 1.364581 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 4.15011 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 4.991464 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 4.50259 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 3.283618 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 2.346565 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 2.178528 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 2.497651 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 2.145094 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.317816 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.364723 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.169544 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.696301 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 2.274829 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.763548 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.569149 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.315656 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.327015 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 10.295374 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 4.470633 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.65537 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.098987 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.4903 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.774032 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 1.316578 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.312118 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 1.389278 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 6.316888 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 3.950984 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 5.329487 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg15596, jg33076, jg3985 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30265900 |
| Apiaceae | Apium graveolens | 3 | Ag2G00421, Ag2G02778, Ag3G01353 |
| Arecaceae | Cocos nucifera | 3 | COCNU_01G014880, COCNU_11G005370, COCNU_11G005380 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103696275, gene-LOC103707793 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.3377.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri14G01498, Ftri4G02475 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G24230.1, AT5G58150.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10000045m.g.v1.0, Thhalv10012745m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g03170.v2.2, Sp6g19830.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g019540.2N, BniB08g013380.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2552 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2692 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno05g08450, gene.Cymno06g07670 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g09680 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.279 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00000855 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0625400, gene-QOZ80_8BG0653310 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0473960.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_032235 |
| Poaceae | Oryza coarctata | 2 | Oco15G005480, Oco16G005110 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g17410.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G106600 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr17G011450, Chr20G008760, Chr29G008460 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G312900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG030040, gene_TRIDC5BG031680 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G185000.1.cds1, TraesCS5B02G183000.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb177640_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-49471 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g23884 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc01g18690, gene.Posoc03g12950, gene.Posoc03g12960 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_10_RagTag.123, evm.TU.Scaffold_4_RagTag.2180 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-13911, nbisL1-mrna-25304 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-1878, nbisL1-mrna-21282 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-16562, nbisL1-mrna-4930 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000008l.470, add.evm.TU.utg000033l.24 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014628 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17483, nbisL1-mrna-23534 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-14517, nbisL1-mrna-9213 |
| Salicaceae | Populus euphratica | 2 | populus_peu05591, populus_peu12232 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132602970 |
| Solanaceae | Solanum chilense | 1 | SOLCI001360200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026117 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.12367_chr02_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1060 |
| Zosteraceae | Zostera marina | 1 | Zosma05g17630.v3.1 |