halophFGD

Basic Information

Locus ID: Ag2G02715

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Belongs to the protein kinase superfamily

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr2	313844083	313845681	-	Ag2G02715

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.54	30,150.34 Da	36.03	78.66	-0.38

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF07714	Protein tyrosine and serine/threonine kinase	49	138	1.4E-10	IPR001245
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	50	197	6.41E-21	IPR011009
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	144	205	4.1E-10	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	36	143	4.3E-19	-
SMART	SM00219	tyrkin_6	20	198	4.5E-5	IPR020635

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0004713 (protein tyrosine kinase activity)

KEGG Pathway

KO Term:

K04733 (interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) map04621 (NOD-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G15890.1	Protein kinase superfamily protein.
RefSeq	XP_017251812.1	PREDICTED: PTI1-like tyrosine-protein kinase At3g15890 isoform X1 [Daucus carota subsp. sativus]
Swiss-Prot	Q9LSC2	PTI1-like tyrosine-protein kinase At3g15890 OS=Arabidopsis thaliana OX=3702 GN=At3g15890 PE=2 SV=1
TrEMBL	A0A1R3GNK0	Protein kinase domain-containing protein OS=Corchorus olitorius OX=93759 GN=COLO4_34128 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.507976	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.205085	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.253634	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.346948	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.095509	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0.159157	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	0.138639	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	0.0398	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0.114706	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.060088	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.254986	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.162845	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.210779		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	0		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.267255	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0.396368	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg13497, jg14055, jg25440, jg4060
Aizoaceae	Mesembryanthemum crystallinum	1	gene_26212
Amaranthaceae	Atriplex hortensis	1	Ah010555
Amaranthaceae	Beta vulgaris	1	BVRB_9g219230
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg11585, Sbi_jg46525
Amaranthaceae	Salicornia europaea	1	Seu_jg20841
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00005157
Amaranthaceae	Suaeda glauca	2	Sgl56384, Sgl61915
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000018788, gene:ENSEOMG00000038836 ... gene:ENSEOMG00000050646
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.7BG0009760, CQ.Regalona.r1.9AG0014870
Anacardiaceae	Pistacia vera	3	pistato.v30128430, pistato.v30181900, pistato.v30263930
Apiaceae	Apium graveolens	4	Ag10G02655, Ag10G02769, Ag2G02715, Ag9G01178
Arecaceae	Cocos nucifera	4	COCNU_01G010560, COCNU_01G018700, COCNU_11G000510 ... scaffold003476G000010
Arecaceae	Phoenix dactylifera	5	gene-LOC103701699, gene-LOC103704325, gene-LOC103710111 ... gene-LOC103711493, gene-LOC103718553
Asparagaceae	Asparagus officinalis	5	AsparagusV1_05.3280.V1.1, AsparagusV1_05.3460.V1.1 ... AsparagusV1_05.3461.V1.1, AsparagusV1_08.1570.V1.1, AsparagusV1_08.3.V1.1
Asteraceae	Flaveria trinervia	4	Ftri14G29499, Ftri18G11561, Ftri1G31513, Ftri4G24457
Brassicaceae	Arabidopsis thaliana	2	AT1G52540.1, AT3G15890.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10011602m.g.v1.0, Thhalv10020984m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp1g39090.v2.2, Sp3g14220.v2.2
Brassicaceae	Brassica nigra	4	BniB04g057350.2N, BniB06g028160.2N, BniB07g028540.2N ... BniB07g053900.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq02G2053, Ceq03G1189
Casuarinaceae	Casuarina glauca	3	Cgl02G0340, Cgl02G2121, Cgl03G1296
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno13g02000, gene.Cymno17g04780
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate01g03440, gene.Thate05g18560
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-3752, nbisL1-mrna-710
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG01.2240, evm.TU.LG01.494, evm.TU.LG07.448
Plantaginaceae	Plantago ovata	3	Pov_00000552, Pov_00012594, Pov_00020228
Plumbaginaceae	Limonium bicolor	1	Lb3G18287
Poaceae	Echinochloa crus-galli	12	AH03.2712, AH06.2508, AH06.373, AH07.626, BH03.2853 ... BH06.2310, BH06.495, BH07.752, CH01.1605, CH03.3060, CH06.2534, CH06.493
Poaceae	Eleusine coracana subsp. coracana	7	gene-QOZ80_2AG0104180, gene-QOZ80_2BG0157530 ... gene-QOZ80_6AG0509970, gene-QOZ80_6AG0528460, gene-QOZ80_6BG0462220, gene-QOZ80_6BG0482470, gene-QOZ80_6BG0500410
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.5HG0498720.1, HORVU.MOREX.r3.6HG0576010.1 ... HORVU.MOREX.r3.7HG0656030.1, HORVU.MOREX.r3.7HG0740660.1.CDS1
Poaceae	Lolium multiflorum	5	gene-QYE76_006833, gene-QYE76_021140, gene-QYE76_028409 ... gene-QYE76_036503, gene-QYE76_037118
Poaceae	Oryza coarctata	6	Oco03G004380, Oco04G004390, Oco11G003150, Oco11G014270 ... Oco12G003120, Oco12G014430
Poaceae	Oryza sativa	3	LOC_Os02g09359.1, LOC_Os06g07070.1, LOC_Os06g44430.1
Poaceae	Paspalum vaginatum	4	gene-BS78_02G252400, gene-BS78_04G065100 ... gene-BS78_10G055700, gene-BS78_10G212700
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0202265, Pt_Chr0402065, Pt_Chr0601126, Pt_Chr0700004 ... Pt_Chr0700992
Poaceae	Sporobolus alterniflorus	12	Chr02G031230, Chr05G008950, Chr06G031520, Chr07G015680 ... Chr08G006510, Chr0G000440, Chr10G019400, Chr11G003230, Chr11G022090, Chr14G002400, Chr21G001500, Chr21G010520
Poaceae	Thinopyrum elongatum	4	Tel5E01G508300, Tel6E01G347700, Tel7E01G259500 ... Tel7E01G851000
Poaceae	Triticum dicoccoides	7	gene_TRIDC5AG047210, gene_TRIDC6AG025240 ... gene_TRIDC6BG031460, gene_TRIDC7AG015160, gene_TRIDC7AG069590, gene_TRIDC7BG004440, gene_TRIDC7BG064040
Poaceae	Triticum aestivum	12	TraesCS5A02G319400.1, TraesCS5B02G319800.1 ... TraesCS5D02G325600.1, TraesCS6A02G180900.1, TraesCS6B02G204600.3, TraesCS6D02G164200.2, TraesCS7A02G129300.1, TraesCS7A02G497600.1.cds1, TraesCS7B02G029200.1, TraesCS7B02G404400.1.cds1, TraesCS7D02G128300.1, TraesCS7D02G484900.1.cds1
Poaceae	Zea mays	6	Zm00001eb206490_P002, Zm00001eb234490_P002 ... Zm00001eb271540_P006, Zm00001eb319540_P002, Zm00001eb375560_P001, Zm00001eb389550_P002
Poaceae	Zoysia japonica	6	nbis-gene-33562, nbis-gene-35293, nbis-gene-35294 ... nbis-gene-49579, nbis-gene-5093, nbis-gene-9860
Poaceae	Zoysia macrostachya	5	Zma_g12329, Zma_g29167, Zma_g30019, Zma_g30926, Zma_g32213
Portulacaceae	Portulaca oleracea	4	evm.TU.LG06.1254, evm.TU.LG07.1784, evm.TU.LG11.602 ... evm.TU.LG15.1390
Posidoniaceae	Posidonia oceanica	1	gene.Posoc10g04540
Rhizophoraceae	Bruguiera sexangula	8	evm.TU.Scaffold_10_RagTag.1169, evm.TU.Scaffold_4_RagTag.186 ... evm.TU.Scaffold_10_RagTag.228, evm.TU.Scaffold_10_RagTag.229, evm.TU.Scaffold_11_RagTag.1307, evm.TU.Scaffold_18_RagTag.410, evm.TU.Scaffold_4_RagTag.2104, evm.TU.Scaffold_4_RagTag.2105
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-12616, nbisL1-mrna-13342, nbisL1-mrna-29164 ... nbisL1-mrna-6806
Rhizophoraceae	Ceriops tagal	5	nbisL1-mrna-1695, nbisL1-mrna-1696, nbisL1-mrna-1749 ... nbisL1-mrna-2924, nbisL1-mrna-6830
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-16652, nbisL1-mrna-2107, nbisL1-mrna-21766 ... nbisL1-mrna-7849
Rhizophoraceae	Kandelia candel	5	add.evm.TU.utg000008l.40, evm.TU.utg000004l.326 ... evm.TU.utg000010l.331, evm.TU.utg000023l.208, evm.TU.utg000033l.153
Rhizophoraceae	Kandelia obovata	4	Maker00001374, Maker00004027, Maker00008527, Maker00018884
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-16322, nbisL1-mrna-17659, nbisL1-mrna-23378 ... nbisL1-mrna-7271
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-21401, nbisL1-mrna-23381, nbisL1-mrna-6223
Salicaceae	Populus euphratica	6	populus_peu02579, populus_peu12119, populus_peu12142 ... populus_peu29201, populus_peu30557, populus_peu33498
Solanaceae	Lycium barbarum	3	gene-LOC132602027, gene-LOC132633003, gene-LOC132634003
Solanaceae	Solanum chilense	3	SOLCI001728200, SOLCI005717900, SOLCI006322800
Solanaceae	Solanum pennellii	3	gene-LOC107014126, gene-LOC107015427, gene-LOC107024726
Tamaricaceae	Reaumuria soongarica	1	gene_10151
Tamaricaceae	Tamarix chinensis	1	TC08G2214
Zosteraceae	Zostera marina	1	Zosma05g19260.v3.1