Basic Information
Locus ID:
Ag2G02688
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Guanine nucleotide-binding protein subunit beta-like protein 1 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 312629761 | 312636724 | + | Ag2G02688 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.53 | 41,310.99 Da | 38.93 | 81.63 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 338 | 372 | 0.035 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 9 | 45 | 3.7E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 62 | 92 | 0.054 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 7 | 373 | 2.88E-43 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 5 | 111 | 7.4E-18 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 112 | 380 | 2.2E-27 | IPR015943 |
| SMART | SM00320 | WD40_4 | 334 | 373 | 2.4E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 246 | 285 | 11.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 48 | 92 | 0.67 | IPR001680 |
| SMART | SM00320 | WD40_4 | 6 | 45 | 2.2E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 292 | 331 | 4.9 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 341 | 381 | 11.154684 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 13 | 54 | 16.289801 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 341 | 381 | 11.778342 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 13 | 45 | 12.947401 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 75 | 93 | 8.536777 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 360 | 374 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 79 | 93 | 2.2E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 360 | 374 | 2.2E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 32 | 46 | 2.2E-7 | IPR020472 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G29860.1 | Transducin/WD40 repeat-like superfamily protein. Encodes a WD repeat protein with seven WD repeat motifs, predicted to function in protein-protein interaction. Mutations caused defects in both embryo and seedling development. | 0 |
| RefSeq | XP_017249435.1 | PREDICTED: protein DECREASED SIZE EXCLUSION LIMIT 1 [Daucus carota subsp. sativus] | 0 |
| F1DLK1 | Protein DECREASED SIZE EXCLUSION LIMIT 1 OS=Nicotiana benthamiana OX=4100 GN=DSE1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A164YBF3 | WD_REPEATS_REGION domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_017500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 8.084376 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 8.614248 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 5.060831 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 4.83093 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 5.528845 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 5.13102 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 4.50201 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 4.521227 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 25.882929 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 25.72216 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 28.347229 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 26.330059 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 23.691433 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 20.612988 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 5.350537 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 7.052076 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 7.878314 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 11.270647 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 7.80542 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 7.105845 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 12.151324 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 8.457862 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 8.393158 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 8.888136 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 9.856961 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 11.498227 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 9.660865 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 9.079197 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 10.535542 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.385493 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.353319 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.79998 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 6.071036 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 9.571957 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 4.352985 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 5.141818 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.750352 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 4.128191 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 7.218744 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 3.693398 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 4.658692 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 4.341633 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 7.575001 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 10.208411 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 9.35327 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 4.654464 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 7.172663 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 23.53821 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 25.170452 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 28.641695 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg35543 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_1192, gene_15988 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023541 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g004990 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg28876, Sbi_jg3058 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg6837 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000906 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl11652, Sgl17150, Sgl74242 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014811, gene:ENSEOMG00000032728 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.1BG0016430 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30224740 |
| Apiaceae | Apium graveolens | 1 | Ag2G02688 |
| Arecaceae | Cocos nucifera | 1 | COCNU_16G001690 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103716434 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_03.3011.V1.1, AsparagusV1_04.1734.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G06431 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G29860.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10025433m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g27670.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g007850.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0926 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1000 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g02220 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0488s00005.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g19710 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.556 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G26550 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.502, BH06.196, CH06.186 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0507380, gene-QOZ80_6BG0459450 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0297660.1, HORVU.MOREX.r3.7HG0644450.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_027641 |
| Poaceae | Oryza coarctata | 1 | Oco12G001420 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g04040.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G023900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0402004, Pt_Chr0402041 |
| Poaceae | Sporobolus alterniflorus | 9 | Chr06G024840, Chr07G019130, Chr07G019140, Chr11G023810 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G550900, Tel7E01G142600 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG049660, gene_TRIDC3BG055900 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3A02G344500.1, TraesCS3B02G376400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb378230_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-40312 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g29040 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG19.618, evm.TU.LG24.82 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g08280 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.1905 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17233 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17120 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11880 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.1161 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007726 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15526 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3185 |
| Salicaceae | Populus euphratica | 1 | populus_peu35399 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132614744 |
| Solanaceae | Solanum chilense | 1 | SOLCI003378700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107004689 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_1012 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G2175 |
| Zosteraceae | Zostera marina | 1 | Zosma01g26310.v3.1 |