halophFGD

Basic Information

Locus ID: Ag2G02684

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Serine threonine-protein kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr2	312485733	312487178	+	Ag2G02684

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.44	28,023.79 Da	46.44	91.52	-0.32

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF07714	Protein tyrosine and serine/threonine kinase	1	192	3.8E-26	IPR001245
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	1	195	4.86E-50	IPR011009
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	1	210	3.7E-58	-
SMART	SM00220	serkin_6	1	195	1.3E-6	IPR000719
ProSiteProfiles	PS50011	Protein kinase domain profile.	1	210	24.894934	IPR000719
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	45	57	-	IPR008271
MobiDBLite	mobidb-lite	consensus disorder prediction	223	244	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	221	244	-	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K04733 (interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) map04621 (NOD-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G56140.1	Leucine-rich repeat transmembrane protein kinase.
RefSeq	XP_017251769.1	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140 isoform X2 [Daucus carota subsp. sativus]
Swiss-Prot	C0LGH3	Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidopsis thaliana OX=3702 GN=At1g56140 PE=2 SV=2
TrEMBL	A0A5B7C1J7	Protein kinase domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_042634 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.253899	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.772708	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.540828	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.256817	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	0	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	0	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.071403	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.60295	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.198076	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0.776095	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	1.428287	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0.228893	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0.0919	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.061364	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.234971	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.443086	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	0.362561		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.074958	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.232401	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.100273	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.355564	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0.145566	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0.106299	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg15719
Anacardiaceae	Pistacia vera	1	pistato.v30283650
Apiaceae	Apium graveolens	1	Ag2G02684
Arecaceae	Cocos nucifera	1	COCNU_11G013060
Arecaceae	Phoenix dactylifera	1	gene-LOC103714124
Asparagaceae	Asparagus officinalis	2	AsparagusV1_01.655.V1.1, AsparagusV1_05.2428.V1.1
Asteraceae	Flaveria trinervia	3	Ftri14G26365, Ftri15G11494, Ftri4G14010
Casuarinaceae	Casuarina equisetifolia	1	Ceq04G2044
Casuarinaceae	Casuarina glauca	1	Cgl04G2236
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-2435
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG07.547
Plantaginaceae	Plantago ovata	1	Pov_00000456
Poaceae	Echinochloa crus-galli	3	AH09.2578, BH09.2802, CH09.3002
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_4AG0300910, gene-QOZ80_4BG0331630
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.2HG0202390.1
Poaceae	Lolium multiflorum	1	gene-QYE76_047053
Poaceae	Oryza coarctata	2	Oco07G018040, Oco08G017390
Poaceae	Oryza sativa	1	LOC_Os04g56360.1
Poaceae	Paspalum vaginatum	1	gene-BS78_06G266900
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0300542, Pt_Chr0300563
Poaceae	Sporobolus alterniflorus	2	Chr25G001550, Chr30G001550
Poaceae	Thinopyrum elongatum	1	Tel2E01G846300
Poaceae	Triticum dicoccoides	2	gene_TRIDC2AG070440, gene_TRIDC2BG076120
Poaceae	Triticum aestivum	3	TraesCS2A02G500700.1, TraesCS2B02G528600.1 ... TraesCS2D02G500900.1
Poaceae	Zea mays	1	Zm00001eb067640_P001
Poaceae	Zoysia japonica	1	nbis-gene-6082
Poaceae	Zoysia macrostachya	1	Zma_g22136
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_10_RagTag.316
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-13247, nbisL1-mrna-25496
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-3708, nbisL1-mrna-7378
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-16729
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000008l.1168, evm.TU.utg000033l.211
Rhizophoraceae	Kandelia obovata	1	Maker00014829
Salicaceae	Populus euphratica	1	populus_peu05786
Solanaceae	Lycium barbarum	1	gene-LOC132602012
Solanaceae	Solanum chilense	1	SOLCI001403600
Solanaceae	Solanum pennellii	1	gene-LOC107024503