Basic Information
Locus ID:
Ag2G02682
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
cellular biosynthetic process
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 312477751 | 312481831 | + | Ag2G02682 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.91 | 61,259.19 Da | 48.21 | 89.27 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08007 | Cupin superfamily protein | 197 | 321 | 7.8E-24 | IPR003347 |
| SUPERFAMILY | SSF51197 | Clavaminate synthase-like | 56 | 354 | 9.48E-30 | - |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 38 | 329 | 2.5E-44 | - |
| ProSiteProfiles | PS51184 | JmjC domain profile. | 189 | 336 | 17.55357 | IPR003347 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_017253913.1 | PREDICTED: uncharacterized protein LOC108223947 [Daucus carota subsp. sativus] | 0 |
| Q16W06 | Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66 OS=Aedes aegypti OX=7159 GN=AAEL009382 PE=3 SV=1 | 0 | |
| TrEMBL | A0A5B7C259 | Bifunctional lysine-specific demethylase and histidyl-hydroxylase OS=Davidia involucrata OX=16924 GN=Din_043757 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 7.293058 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 4.344046 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 3.894022 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 5.392283 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 4.581314 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 3.277759 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 5.521999 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 3.836852 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 7.169083 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 5.321868 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 5.567144 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 6.376276 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 5.492266 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 5.297231 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 2.177908 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 1.619955 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 4.114362 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 2.580439 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 1.712703 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 2.52297 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 2.824867 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 3.656399 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 4.688389 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 3.903802 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 4.654182 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 2.567082 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 2.029036 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 2.754868 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 3.751817 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.625761 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 3.115911 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.586446 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 3.54973 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 4.808925 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 3.847763 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.271685 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.14523 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.756154 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 4.493549 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 2.757503 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 2.344458 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 2.175572 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 2.707852 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 3.863384 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 4.663583 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 2.339532 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 3.772164 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 6.249675 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 5.240727 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 5.748587 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg33161 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_11116 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah015626 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g190100 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25273, Sbi_jg9125 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19470 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011220 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl43043, Sgl43044, Sgl43051, Sgl47863 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000044437 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.8BG0014390 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30262610 |
| Apiaceae | Apium graveolens | 2 | Ag2G02681, Ag2G02682 |
| Arecaceae | Cocos nucifera | 1 | contig69644988G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103715626 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.653.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri7G32488 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G2040 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G2231 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g06440 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0046s00021.v1.0, Dusal.2808s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g11440 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.540 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb6G31987, Lb6G31988 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2582, BH09.2806, CH09.3005 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_4BG0331590 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0202340.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_047058 |
| Poaceae | Oryza coarctata | 2 | Oco07G018070, Oco08G017430 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g56405.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G267400 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr23G001940, Chr26G017380 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G845700 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG070390, gene_TRIDC2BG076080 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G500300.1, TraesCS2B02G528200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb432590_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-6086 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g22139 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG08.1555, evm.TU.LG22.448, evm.TU.LG22.449 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g15040, gene.Posoc03g15050 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.1999 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-25508 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15038 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4774 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.1159 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001398 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14228 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21002 |
| Salicaceae | Populus euphratica | 3 | populus_peu05791, populus_peu11162, populus_peu11163 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_12508 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G0444 |
| Zosteraceae | Zostera marina | 1 | Zosma03g00200.v3.1 |