Basic Information
Locus ID:
Ag2G02651
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 311315854 | 311318266 | - | Ag2G02651 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.60 | 33,629.00 Da | 52.66 | 92.38 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 53 | 76 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 263 | 307 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 53 | 91 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 280 | 299 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_017250431.1 | PREDICTED: uncharacterized protein LOC108221043 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A164YP47 | PPC domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_018039 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 11.854114 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 10.411128 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 1.864807 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 1.454983 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 1.944547 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1.24682 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.742958 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.908738 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 3.532732 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 4.076056 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 4.19918 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 7.473955 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 18.277121 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 13.642434 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.737185 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.431272 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 2.882629 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 8.648406 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 11.253934 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0.054771 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.141419 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0.201486 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.182111 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0.286892 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.184227 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.109809 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.052362 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 5.507467 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 4.18867 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 14.809377 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.355194 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.139686 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.878003 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 2.584345 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 12.789837 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 5.335114 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 7.203466 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 1.17601 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.19159 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.207254 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 6.065024 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 1.736227 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 8.187872 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 1.759385 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0.56495 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg10079, jg3165, jg34080 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_20427 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah031536 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g156950 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg2160, Sbi_jg34348 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2614 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005875 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl71117, Sgl74700 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008372, gene:ENSEOMG00000037268 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.7AG0023050 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30178070, pistato.v30269210 |
| Apiaceae | Apium graveolens | 2 | Ag2G02651, Ag8G00018 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G004550, COCNU_12G006220 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103706253, gene-LOC103708905 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.369.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri10G30680, Ftri6G01578, Ftri9G09567 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G51580.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10010441m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g10690.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g074630.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0887 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0904 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno02g18290, gene.Cymno03g01890 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g08660, gene.Thate07g08950 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-11951, nbisL1-mrna-3186 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.868, evm.TU.LG02.1692 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00002595, Pov_00011612 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G25919 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.2028, BH05.2163, CH05.2240 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0369580, gene-QOZ80_5BG0417010 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0070940.1 |
| Poaceae | Oryza coarctata | 2 | Oco09G012250, Oco10G012340 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g40040.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G184100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0504560, Pt_Chr0702125 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr18G012180, Chr22G005560 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G487000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG044660, gene_TRIDC1BG050540 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G300800.1, TraesCS1B02G310800.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb290650_P001, Zm00001eb352040_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-14251, nbis-gene-25373 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g27000, Zma_g28447 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.2070, evm.TU.LG14.369 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g08670 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.537 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4656 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2087 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9650 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.631 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005885 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2628 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-16616 |
| Salicaceae | Populus euphratica | 3 | populus_peu11511, populus_peu19154, populus_peu25264 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132631076, gene-LOC132640445 |
| Solanaceae | Solanum chilense | 2 | SOLCI003555700, SOLCI006470200 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107019095, gene-LOC107031781 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6615 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G0982 |
| Zosteraceae | Zostera marina | 1 | Zosma04g25420.v3.1 |