Basic Information
Locus ID:
Ag2G02551
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 299318652 | 299350184 | - | Ag2G02551 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.11 | 121,207.41 Da | 40.26 | 95.06 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15873 | R-SNARE_STXBP5_6 | 1045 | 1094 | 3.55204E-15 | - |
| Pfam | PF00957 | Synaptobrevin | 1046 | 1098 | 2.3E-7 | IPR001388 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 253 | 323 | 8.3E-5 | IPR024977 |
| SUPERFAMILY | SSF58038 | SNARE fusion complex | 1040 | 1093 | 3.66E-7 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 41 | 635 | 7.33E-30 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 480 | 729 | 5.0E-12 | IPR015943 |
| Gene3D | G3DSA:1.20.5.110 | - | 1037 | 1093 | 1.4E-8 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 174 | 339 | 5.4E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 19 | 169 | 1.6E-8 | IPR015943 |
| SMART | SM00320 | WD40_4 | 466 | 507 | 410.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 26 | 66 | 26.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 235 | 283 | 0.73 | IPR001680 |
| SMART | SM00320 | WD40_4 | 68 | 107 | 55.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 169 | 209 | 350.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 521 | 560 | 12.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 588 | 627 | 3.6 | IPR001680 |
| ProSiteProfiles | PS50892 | v-SNARE coiled-coil homology domain profile. | 1036 | 1100 | 10.925566 | IPR042855 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 264 | 292 | 8.737287 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 75 | 116 | 8.971213 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 727 | 751 | - | - |
| Coils | Coil | Coil | 1051 | 1085 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05570.2 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_017241737.1 | PREDICTED: uncharacterized protein LOC108214315 isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q9Y2K9 | Syntaxin-binding protein 5-like OS=Homo sapiens OX=9606 GN=STXBP5L PE=1 SV=2 | 0 | |
| TrEMBL | A0A166AS15 | V-SNARE coiled-coil homology domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_010464 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 8.860655 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 7.550819 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 8.61578 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 9.90964 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 8.886176 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 7.601473 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 7.683554 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 9.183051 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 13.687002 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 12.374961 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 13.494819 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 10.703418 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 11.462868 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 10.468391 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 6.953602 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 8.191826 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 8.163359 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 11.998408 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 10.416803 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 8.706725 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 10.951402 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 11.392388 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 13.478238 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 11.982067 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 9.313293 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 15.961455 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 11.734425 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 12.908116 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 15.26912 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 4.260287 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 5.990397 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.43444 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 4.764472 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 5.42803 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 5.762051 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 4.186919 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.881409 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.832517 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 9.029318 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 4.546479 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 7.592296 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 7.461349 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 8.342598 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 9.42295 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 10.374726 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 6.457204 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 11.303345 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 11.219955 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 14.105656 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 14.847278 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg10029, jg14773 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_17011, gene_2261 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah003367, Ah035335 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_2g023630, BVRB_5g102820 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg21447, Sbi_jg22405, Sbi_jg4746, Sbi_jg7326 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg12688, Seu_jg16295 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00001419, GOSA_00016467 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl51704, Sgl57010, Sgl62840, Sgl67457 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000018275, gene:ENSEOMG00000018908 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1BG0019970, CQ.Regalona.r1.2AG0021700 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30177080, pistato.v30267150 |
| Apiaceae | Apium graveolens | 3 | Ag2G02551, Ag6G01838, AgUnG00887 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G013940 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103709502 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.1622.V1.1, AsparagusV1_07.487.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G19788, Ftri9G07614 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G05570.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012508m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g37290.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g055070.2N, BniB05g029080.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G0115, Ceq08G1005 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G0125, Cgl08G1027 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g16550 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0933s00001.v1.0, Dusal.1238s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g02460 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-10926, nbisL1-mrna-5849 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.1004, evm.TU.LG02.1884 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00006521, Pov_00040527 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G09212, Lb7G33660 |
| Poaceae | Echinochloa crus-galli | 2 | AH03.4148, CH07.22 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0582800, gene-QOZ80_7BG0613930 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0108040.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_038532 |
| Poaceae | Oryza coarctata | 1 | Oco13G016640 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g49300.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G398800 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr24G011680, Chr28G013730, Chr28G013740 |
| Poaceae | Thinopyrum elongatum | 3 | Tel2E01G183700, Tel3E01G556700, Tel5E01G873800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG009420, gene_TRIDC2BG011490 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G085000.1, TraesCS2B02G099700.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb062090_P001, Zm00001eb226480_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-18 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g7128 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG04.2863, evm.TU.LG05.156, evm.TU.LG10.981 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g36740 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.326, evm.TU.Scaffold_1_RagTag.1827 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-14085 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-11492, nbisL1-mrna-1378 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-14240, nbisL1-mrna-3688 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000005l.158, evm.TU.utg000016l.704 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00009995, Maker00017320 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-443, nbisL1-mrna-4947 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-13771, nbisL1-mrna-18888 |
| Salicaceae | Populus euphratica | 3 | populus_peu06559, populus_peu20440, populus_peu25459 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132608928, gene-LOC132630812 |
| Solanaceae | Solanum chilense | 3 | SOLCI004065500, SOLCI004065600, SOLCI006211300 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107023463, gene-LOC107031635 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_11328, gene_12820 |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G1790, TC06G0280 |
| Zosteraceae | Zostera marina | 1 | Zosma02g21640.v3.1 |