Basic Information
Locus ID:
Ag2G02543
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 297660876 | 297666204 | + | Ag2G02543 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.91 | 70,951.62 Da | 43.38 | 95.02 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00651 | BTB/POZ domain | 37 | 119 | 3.8E-4 | IPR000210 |
| Pfam | PF03000 | NPH3 family | 208 | 476 | 2.7E-82 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 27 | 120 | 8.63E-13 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 24 | 124 | 1.4E-8 | IPR011333 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 208 | 500 | 82.5243 | IPR027356 |
| Coils | Coil | Coil | 540 | 574 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G03010.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_017252411.1 | PREDICTED: BTB/POZ domain-containing protein At1g03010-like isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q9SA69 | BTB/POZ domain-containing protein At1g03010 OS=Arabidopsis thaliana OX=3702 GN=At1g03010 PE=2 SV=1 | 0 | |
| TrEMBL | A0A164YZZ0 | NPH3 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_018349 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 6.940511 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 2.813471 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 3.26722 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 4.979872 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 4.186511 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.160843 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.20941 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.360597 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 24.092655 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 25.138107 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 28.561745 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 18.994827 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 20.106213 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 22.662855 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 15.441389 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 20.045227 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 28.390207 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 14.23199 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 14.05302 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 7.25484 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 10.21551 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 5.019407 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 4.104109 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 7.299744 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 7.91426 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 16.564068 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 21.531855 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 19.525812 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 21.521187 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.848496 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.437069 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.596489 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.28497 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 3.660248 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.422965 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.556291 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.367164 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 2.508756 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 1.859655 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.845891 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.392972 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 27.537771 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 25.565739 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 24.159849 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.162126 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 28.917051 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 13.81487 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 8.732862 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 8.680865 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg35221, jg37918, jg8861 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5181 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah029847 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g164450 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg35616, Sbi_jg989 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg3737 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00026459 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl13092, Sgl13093, Sgl18309, Sgl33059, Sgl38297 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006089, gene:ENSEOMG00000033994 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0014030, CQ.Regalona.r1.7BG0015970 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30009760 |
| Apiaceae | Apium graveolens | 3 | Ag10G01842, Ag2G02543, Ag9G02221 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G009330 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103698243 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_07.1530.V1.1, AsparagusV1_09.450.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri12G08286 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G03010.1, AT2G47860.3 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10007049m.g.v1.0, Thhalv10010186m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g02000.v2.2, Sp5g13750.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g001040.2N, BniB03g038430.2N, BniB05g052920.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1599 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1663 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno04g05580, gene.Cymno05g04740 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g27050, gene.Thate06g23390 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-2958, nbisL1-mrna-6277 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.285 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00008245, Pov_00025912 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb4G23585, Lb4G23601, Lb5G27976 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.3649, BH01.3995, CH01.4269 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0248140, gene-QOZ80_3BG0280140 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0057860.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_067902 |
| Poaceae | Oryza coarctata | 2 | Oco05G013430, Oco06G012990 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g22600.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G355600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0102714 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr04G011300, Chr07G010680, Chr0G033570, Chr12G005050 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G716600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5BG069960, gene_TRIDC7AG022960 |
| Poaceae | Triticum aestivum | 3 | TraesCS5B02G461900.4, TraesCS5D02G463700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb394770_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-1593 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g1216 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.162, evm.TU.LG03.798, evm.TU.LG04.591 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g10130 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.899 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-11448, nbisL1-mrna-21382 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20261 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11520 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.246 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012987 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-10054 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7515 |
| Salicaceae | Populus euphratica | 3 | populus_peu09346, populus_peu27216, populus_peu27217 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132608483, gene-LOC132610739 |
| Solanaceae | Solanum chilense | 1 | SOLCI001551300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107029745 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_7097 |
| Tamaricaceae | Tamarix chinensis | 3 | TC01G0266, TC01G0271, TC01G0279 |
| Zosteraceae | Zostera marina | 1 | Zosma03g20420.v3.1 |