halophFGD

Basic Information

Locus ID: Ag2G02468

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: U-box domain-containing protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr2	289981030	289986976	-	Ag2G02468

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.83	85,064.52 Da	45.96	89.76	-0.34

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd16655	RING-Ubox_WDSUB1_like	680	720	1.78116E-16	-
CDD	cd01989	STK_N	10	165	2.07112E-43	-
Pfam	PF04564	U-box domain	677	743	1.0E-16	IPR003613
Pfam	PF07714	Protein tyrosine and serine/threonine kinase	397	649	6.1E-38	IPR001245
SUPERFAMILY	SSF52402	Adenine nucleotide alpha hydrolases-like	10	144	9.94E-10	-
SUPERFAMILY	SSF57850	RING/U-box	666	745	4.5E-23	-
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	377	650	1.33E-66	IPR011009
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	373	465	7.5E-25	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	675	750	1.9E-26	IPR013083
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	466	674	7.8E-44	-
Gene3D	G3DSA:3.40.50.620	HUPs	8	169	1.6E-8	IPR014729
SMART	SM00220	serkin_6	394	656	7.1E-29	IPR000719
SMART	SM00504	Ubox_2	679	741	2.0E-20	IPR003613
ProSiteProfiles	PS50011	Protein kinase domain profile.	394	656	32.569698	IPR000719
ProSiteProfiles	PS51698	U-box domain profile.	675	748	23.372105	IPR003613
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	511	523	-	IPR008271
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	400	421	-	IPR017441
Coils	Coil	Coil	346	366	-	-
Coils	Coil	Coil	260	284	-	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation) GO:0016567 (protein ubiquitination)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0004842 (ubiquitin-protein transferase activity) GO:0005524 (ATP binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G57035.1	U-box domain-containing protein kinase family protein.
RefSeq	XP_017242514.1	PREDICTED: U-box domain-containing protein 34 isoform X1 [Daucus carota subsp. sativus]
Swiss-Prot	Q8S8S7	U-box domain-containing protein 34 OS=Arabidopsis thaliana OX=3702 GN=PUB34 PE=3 SV=1
TrEMBL	A0A166AST0	RING-type E3 ubiquitin transferase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_010502 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	10.008525	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	10.422138	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	7.82094	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	7.604466	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	8.816971	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	11.187747	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	10.183326	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	10.803493	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	35.319141	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	30.993279	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	35.851498	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	24.316582	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	24.973694	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	19.485743	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	13.735168	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	10.676058	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	10.090963	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	20.196045	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	11.783719	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	35.892715	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	47.55228	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	18.493095	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	17.624254	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	14.880567	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	14.614527	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	18.874092	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	11.032937	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	15.195883	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	15.707236	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	8.705161		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	11.403822		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	8.05971		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	14.909044		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	11.766647		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	17.866545		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	18.004705		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	14.125896		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	14.465004		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	24.542595	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	48.508102	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	30.677422	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	67.30661	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	50.631413	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	33.522511	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	32.907738	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	61.855015	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	29.264942	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	15.08643	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	16.589247	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	14.846153	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg31732, jg32904
Aizoaceae	Mesembryanthemum crystallinum	2	gene_9351, gene_9352
Amaranthaceae	Atriplex hortensis	1	Ah015199
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg24603, Sbi_jg8462
Amaranthaceae	Salicornia europaea	1	Seu_jg20128
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00014730
Amaranthaceae	Suaeda glauca	2	Sgl42895, Sgl47687
Amaranthaceae	Chenopodium album	2	gene:ENSEOMG00000010444, gene:ENSEOMG00000044953
Amaranthaceae	Chenopodium quinoa	1	CQ.Regalona.r1.8BG0016300
Anacardiaceae	Pistacia vera	1	pistato.v30259650
Apiaceae	Apium graveolens	2	Ag2G02468, Ag5G01558
Arecaceae	Cocos nucifera	1	COCNU_02G000920
Arecaceae	Phoenix dactylifera	1	gene-LOC103709628
Asparagaceae	Asparagus officinalis	2	AsparagusV1_01.2297.V1.1, AsparagusV1_06.1459.V1.1
Asteraceae	Flaveria trinervia	1	Ftri8G01336
Brassicaceae	Arabidopsis thaliana	2	AT2G19410.1, AT5G57035.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10012732m.g.v1.0, Thhalv10022572m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp3g32790.v2.2, Sp3g32800.v2.2, Sp6g18750.v2.2
Brassicaceae	Brassica nigra	6	BniB02g015510.2N, BniB02g036230.2N, BniB03g068640.2N ... BniB04g025040.2N, BniB04g025050.2N, BniB08g014030.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq06G0831
Casuarinaceae	Casuarina glauca	1	Cgl06G0857
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno12g00990, gene.Cymno16g01130
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate03g18860
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG07.1265
Plantaginaceae	Plantago ovata	1	Pov_00039627
Plumbaginaceae	Limonium bicolor	2	Lb1G05154, Lb3G16947
Poaceae	Echinochloa crus-galli	6	AH06.2096, AH07.857, BH05.964, BH07.992, CH06.2145, CH07.741
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_2AG0106310, gene-QOZ80_2BG0159880 ... gene-QOZ80_6AG0543530, gene-QOZ80_6BG0496800
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.6HG0579590.1, HORVU.MOREX.r3.7HG0716320.1
Poaceae	Lolium multiflorum	4	gene-QYE76_015963, gene-QYE76_021686, gene-QYE76_034596 ... gene-QYE76_041697
Poaceae	Oryza coarctata	3	Oco04G005890, Oco11G011640, Oco12G011750
Poaceae	Oryza sativa	2	LOC_Os02g12670.1, LOC_Os06g37620.1
Poaceae	Paspalum vaginatum	2	gene-BS78_04G088500, gene-BS78_10G173700
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0202007, Pt_Chr0601857
Poaceae	Sporobolus alterniflorus	4	Chr02G029340, Chr05G007030, Chr10G016870, Chr11G005540
Poaceae	Thinopyrum elongatum	2	Tel6E01G365300, Tel7E01G615000
Poaceae	Triticum dicoccoides	4	gene_TRIDC6AG026870, gene_TRIDC6BG033010 ... gene_TRIDC7AG050860, gene_TRIDC7BG043020
Poaceae	Triticum aestivum	5	TraesCS6B02G213500.2, TraesCS6D02G172100.1 ... TraesCS7A02G364200.2, TraesCS7B02G263700.1, TraesCS7D02G359000.1
Poaceae	Zea mays	2	Zm00001eb205230_P001, Zm00001eb385250_P001
Poaceae	Zoysia japonica	1	nbis-gene-41148
Poaceae	Zoysia macrostachya	1	Zma_g32976
Portulacaceae	Portulaca oleracea	4	evm.TU.LG02.2349, evm.TU.LG07.258, evm.TU.LG15.695 ... evm.TU.LG23.582
Posidoniaceae	Posidonia oceanica	1	gene.Posoc09g10330
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_10_RagTag.540
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-12982
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-12785
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-16926
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000033l.377
Rhizophoraceae	Kandelia obovata	1	Maker00014830
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-4005
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-8167
Salicaceae	Populus euphratica	1	populus_peu11909
Solanaceae	Lycium barbarum	1	gene-LOC132618043
Solanaceae	Solanum chilense	2	SOLCI004414200, SOLCI005557000
Solanaceae	Solanum pennellii	2	gene-LOC107005811, gene-LOC107025999
Tamaricaceae	Reaumuria soongarica	1	gene_3218
Tamaricaceae	Tamarix chinensis	3	TC01G2027, TC04G1940, TC10G1798
Zosteraceae	Zostera marina	2	Zosma01g03350.v3.1, Zosma05g05940.v3.1