Basic Information
Locus ID:
Ag2G02460
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
wall-associated receptor kinase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 287915012 | 287917542 | + | Ag2G02460 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.11 | 70,045.03 Da | 37.53 | 89.86 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 358 | 625 | 1.02776E-98 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 355 | 623 | 6.3E-48 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 336 | 624 | 3.51E-75 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 428 | 635 | 3.0E-55 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 312 | 427 | 2.5E-31 | - |
| SMART | SM00220 | serkin_6 | 352 | 627 | 1.2E-35 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 352 | 627 | 38.421173 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 472 | 484 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 358 | 380 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02070.1 | Protein kinase family protein. | 0 |
| RefSeq | XP_017237511.1 | PREDICTED: wall-associated receptor kinase-like 20 [Daucus carota subsp. sativus] | 0 |
| Q9LZM4 | Wall-associated receptor kinase-like 20 OS=Arabidopsis thaliana OX=3702 GN=WAKL20 PE=2 SV=1 | 0 | |
| TrEMBL | A0A251TNL5 | Protein kinase domain-containing protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr10g0312701 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.275781 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.889581 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.522545 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.363416 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.477953 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.829766 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.634733 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 2.142252 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 2.764524 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 1.096903 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 1.247514 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0.761123 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0.682192 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0.61916 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.500283 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.968115 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.174253 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 4.680461 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.42943 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 13.407953 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 12.265564 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0.277151 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0.065511 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.397912 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0.439305 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0.353517 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.177646 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.443794 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0.253979 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.502933 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.931861 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.399551 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 8.960073 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 3.942732 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 15.338709 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.631785 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.860381 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.112026 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.587461 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 1.798379 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 2.965589 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 124.521111 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 150.79538 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.548041 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.996759 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 86.632339 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 1.420246 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0.738959 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 1.023459 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 2.324902 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 6 | jg3340, jg34, jg9966, jg9967, jg9969, jg9970 |
| Aizoaceae | Mesembryanthemum crystallinum | 4 | gene_15429, gene_15430, gene_15431, gene_16530 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah002507, Ah035180 |
| Amaranthaceae | Beta vulgaris | 4 | BVRB_2g025480, BVRB_5g111240, BVRB_6g141030, BVRB_6g146210 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg22550 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16435 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00016359 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl54093, Sgl54095, Sgl59426, Sgl59428, Sgl62534, Sgl67078 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000018234, gene:ENSEOMG00000018640 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.1BG0018810, CQ.Regalona.r1.2AG0020570 ... |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30175910, pistato.v30274270, pistato.v30284530 |
| Apiaceae | Apium graveolens | 2 | Ag2G02460, Ag5G01623 |
| Arecaceae | Cocos nucifera | 2 | COCNU_16G008350, scaffold008473G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103710205, gene-LOC103716779 |
| Asteraceae | Flaveria trinervia | 4 | Ftri17G00869, Ftri17G20954, Ftri17G21313, Ftri6G27880 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G53840.1, AT5G02070.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10011109m.g.v1.0, Thhalv10012908m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g40360.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g057930.2N, BniB08g068250.2N |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq02G1162, Ceq02G1530, Ceq08G1117 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl02G1203, Cgl02G1584, Cgl08G1143 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g17380 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g34440 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG01.1153, evm.TU.LG01.2180, evm.TU.LG02.1780 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00002862, Pov_00006426, Pov_00038775 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb0G37049, Lb7G34815 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.2205, BH06.2022, CH06.2237 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0402600, gene-QOZ80_5BG0451100 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0240070.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_010690 |
| Poaceae | Oryza coarctata | 1 | Oco09G005850 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g25390.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_09G113700, gene-BS78_K028700 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr01G022650, Chr12G014310 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G210100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG015240, gene_TRIDC3BG019800 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G122300.1, TraesCS3B02G141500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb177830_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-27619 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g19399 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.933, evm.TU.LG25.404 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g38380 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.363 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-14052, nbisL1-mrna-6113 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12529 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-14207 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000005l.132 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010178 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-472 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19572 |
| Salicaceae | Populus euphratica | 3 | populus_peu06471, populus_peu11343, populus_peu11607 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132604025, gene-LOC132629957, gene-LOC132630363 |
| Solanaceae | Solanum chilense | 3 | SOLCI004068200, SOLCI004436900, SOLCI006288800 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107006010, gene-LOC107030767, gene-LOC107031187 |
| Tamaricaceae | Reaumuria soongarica | 4 | gene_10659, gene_7635, gene_7636, gene_7637 |
| Tamaricaceae | Tamarix chinensis | 3 | TC07G0415, TC07G0417, TC08G0871 |
| Zosteraceae | Zostera marina | 2 | Zosma02g12720.v3.1, Zosma02g12870.v3.1 |