Basic Information
Locus ID:
Ag2G02425
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
LRR receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 282254150 | 282256678 | - | Ag2G02425 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.08 | 68,856.84 Da | 41.02 | 96.70 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 306 | 575 | 1.92579E-94 | - |
| Pfam | PF19160 | SPARK | 30 | 169 | 1.3E-21 | IPR043891 |
| Pfam | PF00069 | Protein kinase domain | 301 | 571 | 1.7E-42 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 283 | 592 | 6.47E-76 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 381 | 579 | 2.9E-57 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 262 | 379 | 1.9E-29 | - |
| SMART | SM00220 | serkin_6 | 300 | 579 | 6.0E-31 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 300 | 583 | 35.085548 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 306 | 328 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 425 | 437 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G48010.1 | receptor-like kinase in in flowers 3. receptor-like serine/threonine kinase (RKF3) | 0 |
| RefSeq | XP_017249089.1 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RKF3 [Daucus carota subsp. sativus] | 0 |
| P93050 | Probable LRR receptor-like serine/threonine-protein kinase RKF3 OS=Arabidopsis thaliana OX=3702 GN=RKF3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A164Z0Q0 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_018380 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 3.764385 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 1.743891 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 2.162185 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 1.582811 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 1.736796 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 3.306624 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 4.317426 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 5.085713 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 7.335481 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 6.145294 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 5.391708 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 2.916469 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 4.230632 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 2.188682 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 1.717396 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 3.61229 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.255347 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 5.472262 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 5.88363 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 9.303788 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 15.571552 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 3.255534 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 2.094831 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 2.372738 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 3.897478 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0.387977 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.302484 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 1.858396 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0.534931 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.421412 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.238092 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.270352 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 3.324474 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 2.407322 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 5.316326 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.72291 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.258587 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.566786 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.523043 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 1.05912 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.677113 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 81.176704 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 55.404846 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 17.103159 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 5.897214 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 68.757332 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 10.803245 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 12.743539 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 2.181753 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 3.255286 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg35260 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_6253, gene_6254 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah005097 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g073960 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg17764, Sbi_jg62422 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg999 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00007232 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl23933, Sgl29112 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009565, gene:ENSEOMG00000027373 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0002420, CQ.Regalona.r1.4BG0002500 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30011390 |
| Apiaceae | Apium graveolens | 6 | Ag11G04050, Ag2G02425, AgUnG00541, AgUnG00542, AgUnG00543 ... |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G002830 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103707538 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.2017.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G25519 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G48010.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016382m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g18630.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g022920.2N |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq01G0160, Ceq06G2147, Ceq06G2300 |
| Casuarinaceae | Casuarina glauca | 4 | Cgl01G0151, Cgl06G2261, Cgl06G2417, Cgl06G2418 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.234 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00024798 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G24546, Lb7G34609 |
| Poaceae | Echinochloa crus-galli | 1 | CH02.1987 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0017500, gene-QOZ80_1BG0066840 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0348910.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_043010 |
| Poaceae | Oryza coarctata | 2 | Oco01G010600, Oco02G011340 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g28730.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_K057300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0301988, Pt_Chr0302012 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr04G020450, Chr19G014270, Chr27G000900 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G175600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG032740, gene_TRIDC4BG017090 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G205800.1.cds1, TraesCS4B02G109400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb231410_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-21608 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g10378, Zma_g10379 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG03.754, evm.TU.LG03.757, evm.TU.LG12.972 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g10890 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.880 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21343 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19922 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-18427, nbisL1-mrna-7302 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000003l.199 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17323 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5174 |
| Salicaceae | Populus euphratica | 4 | populus_peu13464, populus_peu15803, populus_peu27180 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132609687, gene-LOC132626815 |
| Solanaceae | Solanum chilense | 1 | SOLCI007222100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107029409 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.752_chr01_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G0309 |
| Zosteraceae | Zostera marina | 1 | Zosma01g20420.v3.1 |