Basic Information
Locus ID:
Ag2G02418
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
E3 Ubiquitin ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 281710265 | 281712856 | + | Ag2G02418 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.26 | 7,218.22 Da | 39.53 | 88.25 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_028956199.1 | E3 ubiquitin-protein ligase SP1-like [Malus domestica] | 0 |
| TrEMBL | A0A540LU24 | RING-type E3 ubiquitin transferase OS=Malus baccata OX=106549 GN=C1H46_024414 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 1.179482 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.711329 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 1.001304 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.598158 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 1.10642 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.966145 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.759558 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.490501 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 2.177862 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 2.574077 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 2.900078 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 2.06585 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 2.910679 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 1.554845 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 12.168104 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 7.002992 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 8.008186 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 2.991606 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 2.415336 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 3.3814 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 4.215674 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 10.751325 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 9.950593 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 4.542637 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 4.866153 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 3.200714 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 4.139398 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 3.262239 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 4.327135 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.216545 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 1.681751 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.684214 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 2.969067 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 2.279984 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.383984 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.612769 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.024316 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.096227 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.635466 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.523159 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.250446 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 2.642125 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 3.107908 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 7.256145 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 5.288569 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 3.186682 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 5.78615 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 3.27073 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 6.901618 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 6.080128 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg35267, jg35268, jg8830 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6242 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah029627 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g163340 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg35755, Sbi_jg721 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg3939 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00001998, GOSA_00019846, GOSA_00019847 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl72148, Sgl75712 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008113, gene:ENSEOMG00000037648 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0014710, CQ.Regalona.r1.7BG0017040 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30011550 |
| Apiaceae | Apium graveolens | 3 | Ag10G00765, Ag2G02418, Ag2G02419 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G017080 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.3230.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G20473 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G59560.1, AT1G63900.2 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10008106m.g.v1.0, Thhalv10024073m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g00790.v2.2, Sp5g00470.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB04g023800.2N, BniB06g061250.2N, BniB08g077040.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G2165 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G2277 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g00140 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0025s00050.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g16890, gene.Thate08g08400 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2604 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1001 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00024779 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G23231, Lb4G26059 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.3576, AH03.3908, BH01.3927, BH03.4197, CH01.4190 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0579760, gene-QOZ80_7BG0610910 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0118540.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_039185 |
| Poaceae | Oryza coarctata | 2 | Oco13G014360, Oco14G015250 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g45350.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G374100, gene-BS78_04G220000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0305013 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr02G018630, Chr0G021230, Chr19G001120, Chr24G013550 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G281900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG017220, gene_TRIDC2BG020790 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G138100.2, TraesCS2B02G162000.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb110530_P003, Zm00001eb329440_P006 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-217 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g6980 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG03.743, evm.TU.LG06.1818, evm.TU.LG12.985 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g12130, gene.Posoc02g34640 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.942 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-11398 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-19915, nbisL1-mrna-7708 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11560 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.274 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013588 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-10017 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7563 |
| Salicaceae | Populus euphratica | 1 | populus_peu27167 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132608209 |
| Solanaceae | Solanum chilense | 1 | SOLCI002235400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107023810 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6245 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G0365 |
| Zosteraceae | Zostera marina | 2 | Zosma01g32240.v3.1, Zosma04g26880.v3.1 |