Basic Information
Locus ID:
Ag2G02399
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 280026468 | 280030457 | - | Ag2G02399 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.95 | 42,105.56 Da | 39.12 | 89.08 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF81383 | F-box domain | 6 | 76 | 1.26E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 73 | 1.6E-7 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27310.1 | F-box family protein. | 0 |
| RefSeq | XP_017249086.1 | PREDICTED: probable F-box protein At1g60180 [Daucus carota subsp. sativus] | 0 |
| Q9XIN8 | F-box protein At2g27310 OS=Arabidopsis thaliana OX=3702 GN=At2g27310 PE=2 SV=1 | 0 | |
| TrEMBL | A0A164Z1F5 | F-box protein At2g27310-like OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_018416 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 9.214354 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 10.228843 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 12.819336 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 15.258183 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 16.224449 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 11.421826 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 10.07532 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 6.394377 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 10.709243 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 9.670269 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 11.775865 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 9.196186 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 8.939617 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 7.908932 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 13.239283 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 18.188055 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 12.084485 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 13.385768 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 11.044162 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 12.239334 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 25.045015 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 9.332264 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 8.696485 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 8.866282 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 8.758523 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 7.615481 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 10.240184 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 9.488935 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 8.596086 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 2.758404 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 4.822417 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.941559 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 7.150202 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 11.20304 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 7.888 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 4.597664 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 3.839259 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.861458 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 5.204324 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 3.012847 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 2.73205 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 20.295612 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 24.773766 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 51.438442 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 59.880779 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 12.645681 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 66.303307 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 22.060183 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 17.89419 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 22.285723 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg35285, jg37416, jg8814 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_2663 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah020185 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg5024, Sbi_jg6795 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12988 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003822 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl00440, Sgl05491 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015973, gene:ENSEOMG00000029179 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0013860, CQ.Regalona.r1.3BG0013890 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30028550, pistato.v30028700 |
| Apiaceae | Apium graveolens | 2 | Ag2G02399, Ag9G02160 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.1810.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G12669, Ftri15G14816 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G2129 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G2241 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g04910 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.815 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00024753 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.3590, BH01.3937, CH01.4201 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0248820, gene-QOZ80_3BG0279440 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_067745, gene-QYE76_067761 |
| Poaceae | Oryza coarctata | 2 | Oco05G013870, Oco06G012490 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g24230.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G350100 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G035010, Chr04G011670, Chr07G011080, Chr12G004610 |
| Poaceae | Zea mays | 1 | Zm00001eb017340_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-1538 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g1178 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1693, evm.TU.LG11.1051 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g11480 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_5_RagTag.963, evm.TU.Scaffold_5_RagTag.964 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-11378, nbisL1-mrna-21307 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-19907, nbisL1-mrna-7688, nbisL1-mrna-7689 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11583, nbisL1-mrna-18400 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000003l.184 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009543 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17308, nbisL1-mrna-20716 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-5148, nbisL1-mrna-7587 |
| Salicaceae | Populus euphratica | 5 | populus_peu00202, populus_peu15023, populus_peu17255 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132611004 |
| Solanaceae | Solanum chilense | 1 | SOLCI005841100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107029282 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.4551_chr02_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1435 |
| Zosteraceae | Zostera marina | 2 | Zosma01g20630.v3.1, Zosma04g09430.v3.1 |