Basic Information
Locus ID:
Ag2G02393
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Arm repeat protein interacting with
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 279674776 | 279684945 | + | Ag2G02393 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.97 | 77,093.84 Da | 48.09 | 106.80 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 221 | 260 | 2.1E-7 | IPR000225 |
| Pfam | PF00651 | BTB/POZ domain | 527 | 627 | 1.2E-24 | IPR000210 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 182 | 218 | 3.8E-7 | IPR000225 |
| SUPERFAMILY | SSF48371 | ARM repeat | 68 | 158 | 2.47E-5 | IPR016024 |
| SUPERFAMILY | SSF48371 | ARM repeat | 166 | 502 | 4.61E-56 | IPR016024 |
| SUPERFAMILY | SSF54695 | POZ domain | 525 | 627 | 1.41E-28 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 519 | 659 | 4.5E-40 | IPR011333 |
| Gene3D | G3DSA:1.25.10.10 | - | 11 | 408 | 5.9E-69 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 410 | 518 | 5.6E-9 | IPR011989 |
| SMART | SM00185 | arm_5 | 263 | 303 | 0.052 | IPR000225 |
| SMART | SM00225 | BTB_4 | 533 | 630 | 1.3E-23 | IPR000210 |
| SMART | SM00185 | arm_5 | 461 | 501 | 0.0078 | IPR000225 |
| SMART | SM00185 | arm_5 | 179 | 219 | 4.9E-6 | IPR000225 |
| SMART | SM00185 | arm_5 | 346 | 386 | 16.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 129 | 177 | 0.0066 | IPR000225 |
| SMART | SM00185 | arm_5 | 221 | 261 | 1.4E-6 | IPR000225 |
| SMART | SM00185 | arm_5 | 305 | 345 | 1.1 | IPR000225 |
| SMART | SM00185 | arm_5 | 78 | 128 | 470.0 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 316 | 358 | 10.377399 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 190 | 225 | 11.9874 | IPR000225 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 533 | 600 | 18.285933 | IPR000210 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 232 | 274 | 10.4824 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19330.1 | ARM repeat protein interacting with ABF2. Encodes an armadillo repeat protein involved in the abscisic acid response. The protein interacts with a transcription factor, ABF2, which controls ABA-dependent gene expression via the G-box-type ABA-responsive elements. | 0 |
| RefSeq | XP_017252395.1 | PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Daucus carota subsp. sativus] | 0 |
| B9DHT4 | ARM REPEAT PROTEIN INTERACTING WITH ABF2 OS=Arabidopsis thaliana OX=3702 GN=ARIA PE=1 SV=2 | 0 | |
| TrEMBL | A0A164Z1K3 | BTB domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_018420 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 53.440628 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 42.095814 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 40.150627 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 40.502201 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 42.094429 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 35.930508 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 35.350842 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 32.289371 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 190.017303 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 184.167099 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 188.58313 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 189.565598 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 154.435211 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 157.617813 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 52.712803 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 65.275513 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 55.799175 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 55.074509 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 43.118633 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 51.808571 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 50.062679 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 84.461235 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 91.677002 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 80.486824 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 83.091347 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 63.052864 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 57.72826 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 46.239426 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 70.574875 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 45.707481 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 38.990871 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 37.563641 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 57.743053 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 61.755135 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 54.30164 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 47.354443 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 46.499905 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 49.968391 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 63.927509 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 30.276058 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 17.196079 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 71.309135 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 82.161949 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 105.644089 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 75.106979 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 62.969261 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 66.981445 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 95.969398 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 105.074425 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 88.714325 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg16125, jg8797 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_15577, gene_5045 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah020278, Ah030075 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g163130 |
| Amaranthaceae | Salicornia bigelovii | 7 | Sbi_jg10326, Sbi_jg16118, Sbi_jg23526, Sbi_jg5119 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg13145, Seu_jg24634 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003890 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl00078, Sgl05165, Sgl72016, Sgl75585 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000013730, gene:ENSEOMG00000031011 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.3AG0015080, CQ.Regalona.r1.3AG0015560 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30027170, pistato.v30237070 |
| Apiaceae | Apium graveolens | 2 | Ag2G02393, Ag9G02146 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G016940, COCNU_16G001330 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103723614 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.1797.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G19206, Ftri12G20753 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT5G13060.1, AT5G19330.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10012773m.g.v1.0, Thhalv10012813m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp6g25080.v2.2, Sp6g30920.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB02g043360.2N, BniB02g043420.2N, BniB02g049440.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq06G2070, Ceq06G2073, Ceq09G1320 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1410 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno04g04010, gene.Cymno05g03760 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0135s00028.v1.0, Dusal.1046s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate04g23970, gene.Thate05g25980, gene.Thate09g10230 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG04.1070, evm.TU.LG07.220, evm.TU.LG11.1074 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00008077 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G24802, Lb8G36615 |
| Poaceae | Echinochloa crus-galli | 4 | AH05.2553, BH05.2648, BH08.2275, CH06.1521 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0374120, gene-QOZ80_5BG0422180 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0063780.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_013381 |
| Poaceae | Oryza coarctata | 2 | Oco09G009450, Oco10G009180 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g33050.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_08G076500, gene-BS78_09G136000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0505163, Pt_Chr0505419 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr01G021030, Chr12G016930, Chr18G008580, Chr22G009030 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G414200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG037460, gene_TRIDC1BG042510 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G249400.1, TraesCS1B02G260100.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb287530_P001, Zm00001eb349910_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-23773, nbis-gene-23774 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g28198 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.216, evm.TU.LG04.536, evm.TU.LG06.1719 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g08150 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.984, evm.TU.Scaffold_6_RagTag.722 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-15968 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-4151, nbisL1-mrna-5068 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11598, nbisL1-mrna-604 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000006l.303, evm.TU.utg000011l.435 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00007486, Maker00014040 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-15338, nbisL1-mrna-9985 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-3450, nbisL1-mrna-7605 |
| Salicaceae | Populus euphratica | 5 | populus_peu07356, populus_peu15039, populus_peu21355 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132608139, gene-LOC132610958 |
| Solanaceae | Solanum chilense | 2 | SOLCI002234300, SOLCI006754000 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107023416, gene-LOC107031538 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_4271 |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G1228 |
| Zosteraceae | Zostera marina | 2 | Zosma01g37860.v3.1, Zosma02g23080.v3.1 |