Basic Information
Locus ID:
Ag2G02378
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 278127435 | 278128490 | - | Ag2G02378 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.71 | 39,596.30 Da | 40.15 | 85.19 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 8 | 45 | 4.1E-4 | IPR001810 |
| Pfam | PF01344 | Kelch motif | 149 | 197 | 2.8E-11 | IPR006652 |
| Pfam | PF01344 | Kelch motif | 92 | 146 | 7.2E-9 | IPR006652 |
| SUPERFAMILY | SSF117281 | Kelch motif | 62 | 303 | 5.49E-39 | IPR015915 |
| SUPERFAMILY | SSF81383 | F-box domain | 3 | 42 | 6.93E-7 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 2 | 57 | 2.8E-7 | - |
| Gene3D | G3DSA:2.120.10.80 | - | 59 | 314 | 1.0E-32 | IPR015915 |
| SMART | SM00612 | kelc_smart | 103 | 160 | 1.6E-4 | IPR006652 |
| SMART | SM00256 | fbox_2 | 8 | 48 | 7.2E-5 | IPR001810 |
| SMART | SM00612 | kelc_smart | 161 | 210 | 0.001 | IPR006652 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G63220.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_017251862.1 | PREDICTED: F-box/kelch-repeat protein SKIP30-like [Daucus carota subsp. sativus] | 0 |
| Q9M1W7 | F-box/kelch-repeat protein SKIP30 OS=Arabidopsis thaliana OX=3702 GN=SKIP30 PE=1 SV=2 | 0 | |
| TrEMBL | A0A1S4CS24 | F-box/kelch-repeat protein SKIP30-like isoform X1 OS=Nicotiana tabacum OX=4097 GN=LOC107822084 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 2.290751 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 2.929004 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 2.475203 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 1.721947 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 2.663277 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1.488555 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 3.160572 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 3.478462 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 1.107541 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 1.918156 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0.810464 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0.998388 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 3.688828 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 2.084759 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.165602 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.089534 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.156225 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0.177978 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0.693491 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 1.251214 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.771465 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0.604411 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0.339668 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.554368 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.049227 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0.418229 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.920916 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 1.02951 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.550837 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 1.80082 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 2.018498 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.281468 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.540122 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.958074 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.194149 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 1.207576 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 1.411917 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.473257 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.392363 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 1.626502 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.704161 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.063989 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 1.095079 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 2.97404 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 2.450926 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 1.804818 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg35318, jg8779 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19402 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah002828, Ah006834, Ah019619 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g119480 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30739, Sbi_jg58522 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28395 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004961 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55004, Sgl60263 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000022419, gene:ENSEOMG00000023551 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0024950, CQ.Regalona.r1.5BG0026420 |
| Apiaceae | Apium graveolens | 5 | Ag2G02372, Ag2G02373, Ag2G02378, Ag9G02132, AgUnG00948 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G001130, COCNU_08G000980 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103696565, gene-LOC103698915, gene-LOC103718088 ... |
| Asparagaceae | Asparagus officinalis | 4 | AsparagusV1_05.262.V1.1, AsparagusV1_06.1326.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G08523, Ftri9G33842 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G16250.1, AT3G63220.2 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10007905m.g.v1.0, Thhalv10020524m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g14460.v2.2, Sp3g17330.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB06g041590.2N, BniB07g030480.2N, BniB07g051350.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G2093 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G2292 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno05g04130, gene.Cymno06g13530 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g28610 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-2720, nbisL1-mrna-9670, nbisL1-mrna-9671 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1097 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00008027 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G00568, Lb2G10357, Lb2G10358 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2BG0177140, gene-QOZ80_8AG0616100 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0591810.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_023476 |
| Poaceae | Oryza coarctata | 2 | Oco19G002700, Oco20G002870 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g24900.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_K324200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0204471, Pt_Chr0204475 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G007510, Chr13G017610 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G414700 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC6AG032800, gene_TRIDC6BG039330 ... |
| Poaceae | Triticum aestivum | 4 | TraesCS6A02G211500.1, TraesCS6B02G243200.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb224370_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-27539 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g15930 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.2337, evm.TU.LG02.1081, evm.TU.LG09.890 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g08830, gene.Posoc03g01780 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_5_RagTag.1004, evm.TU.Scaffold_6_RagTag.525 ... |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21281 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-15817, nbisL1-mrna-19890, nbisL1-mrna-5059 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-11617, nbisL1-mrna-18382, nbisL1-mrna-418 |
| Rhizophoraceae | Kandelia candel | 3 | add.evm.TU.utg000003l.177, add.evm.TU.utg000006l.120 ... |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00007421, Maker00013129 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-13790, nbisL1-mrna-1502, nbisL1-mrna-20708 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-3727, nbisL1-mrna-5126, nbisL1-mrna-7624 |
| Salicaceae | Populus euphratica | 4 | populus_peu15062, populus_peu22317, populus_peu22364 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132605632, gene-LOC132610897, gene-LOC132619198 |
| Solanaceae | Solanum chilense | 4 | SOLCI002493600, SOLCI002679200, SOLCI002679300 ... |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107024259, gene-LOC107029196 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_17370, gene_7208 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G0840 |
| Zosteraceae | Zostera marina | 1 | Zosma06g30210.v3.1 |