Basic Information
Locus ID:
Ag2G02372
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Kelch motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 277739749 | 277743297 | + | Ag2G02372 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.42 | 40,470.37 Da | 47.54 | 89.89 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 36 | 76 | 2.7E-5 | IPR001810 |
| Pfam | PF01344 | Kelch motif | 179 | 224 | 5.6E-11 | IPR006652 |
| Pfam | PF01344 | Kelch motif | 124 | 176 | 3.9E-8 | IPR006652 |
| SUPERFAMILY | SSF81383 | F-box domain | 31 | 108 | 1.2E-7 | IPR036047 |
| SUPERFAMILY | SSF117281 | Kelch motif | 91 | 325 | 9.68E-38 | IPR015915 |
| Gene3D | G3DSA:2.120.10.80 | - | 89 | 340 | 2.0E-33 | IPR015915 |
| Gene3D | G3DSA:1.20.1280.50 | - | 33 | 88 | 8.5E-6 | - |
| SMART | SM00256 | fbox_2 | 39 | 79 | 1.9E-4 | IPR001810 |
| SMART | SM00612 | kelc_smart | 191 | 239 | 4.5E-4 | IPR006652 |
| SMART | SM00612 | kelc_smart | 134 | 190 | 4.3E-5 | IPR006652 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G63220.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_017250268.1 | PREDICTED: F-box/kelch-repeat protein SKIP30-like isoform X2 [Daucus carota subsp. sativus] | 0 |
| Q9M1W7 | F-box/kelch-repeat protein SKIP30 OS=Arabidopsis thaliana OX=3702 GN=SKIP30 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5B6ZVP5 | Putative Galactose oxidase/kelch repeat superfamily protein OS=Davidia involucrata OX=16924 GN=Din_017870 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 2.168122 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.89365 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 1.942069 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 1.579888 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 1.834857 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1.861714 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.96945 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.644065 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 1.81953 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 1.983905 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 2.019581 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 1.598602 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 1.221198 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0.610606 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 1.293708 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 1.319595 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 1.116221 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 1.101211 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 2.211825 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 2.529815 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 1.819839 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 1.34728 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 1.261761 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 1.139382 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 1.357148 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 1.483181 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 2.019972 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 1.37043 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 1.221993 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.114561 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.04134 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.224208 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.297083 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.344205 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.916561 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.267308 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.187304 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 1.013453 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.384372 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.189185 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 12.749577 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 9.370833 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 4.875432 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 2.165215 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 7.597548 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 3.73238 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 1.148708 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 1.749005 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 1.627974 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg35318, jg8779 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19402 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah002828, Ah006834, Ah019619 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g119480 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30739, Sbi_jg58522 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28395 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004961 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55004, Sgl60263 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000022419, gene:ENSEOMG00000023551 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0024950, CQ.Regalona.r1.5BG0026420 |
| Apiaceae | Apium graveolens | 5 | Ag2G02372, Ag2G02373, Ag2G02378, Ag9G02132, AgUnG00948 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G001130, COCNU_08G000980 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103696565, gene-LOC103698915, gene-LOC103718088 ... |
| Asparagaceae | Asparagus officinalis | 4 | AsparagusV1_05.262.V1.1, AsparagusV1_06.1326.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G08523, Ftri9G33842 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G16250.1, AT3G63220.2 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10007905m.g.v1.0, Thhalv10020524m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g14460.v2.2, Sp3g17330.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB06g041590.2N, BniB07g030480.2N, BniB07g051350.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G2093 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G2292 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno05g04130, gene.Cymno06g13530 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g28610 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-2720, nbisL1-mrna-9670, nbisL1-mrna-9671 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1097 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00008027 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G00568, Lb2G10357, Lb2G10358 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2BG0177140, gene-QOZ80_8AG0616100 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0591810.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_023476 |
| Poaceae | Oryza coarctata | 2 | Oco19G002700, Oco20G002870 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g24900.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_K324200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0204471, Pt_Chr0204475 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G007510, Chr13G017610 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G414700 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC6AG032800, gene_TRIDC6BG039330 ... |
| Poaceae | Triticum aestivum | 4 | TraesCS6A02G211500.1, TraesCS6B02G243200.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb224370_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-27539 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g15930 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.2337, evm.TU.LG02.1081, evm.TU.LG09.890 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g08830, gene.Posoc03g01780 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_5_RagTag.1004, evm.TU.Scaffold_6_RagTag.525 ... |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21281 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-15817, nbisL1-mrna-19890, nbisL1-mrna-5059 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-11617, nbisL1-mrna-18382, nbisL1-mrna-418 |
| Rhizophoraceae | Kandelia candel | 3 | add.evm.TU.utg000003l.177, add.evm.TU.utg000006l.120 ... |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00007421, Maker00013129 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-13790, nbisL1-mrna-1502, nbisL1-mrna-20708 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-3727, nbisL1-mrna-5126, nbisL1-mrna-7624 |
| Salicaceae | Populus euphratica | 4 | populus_peu15062, populus_peu22317, populus_peu22364 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132605632, gene-LOC132610897, gene-LOC132619198 |
| Solanaceae | Solanum chilense | 4 | SOLCI002493600, SOLCI002679200, SOLCI002679300 ... |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107024259, gene-LOC107029196 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_17370, gene_7208 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G0840 |
| Zosteraceae | Zostera marina | 1 | Zosma06g30210.v3.1 |