Basic Information
Locus ID:
Ag2G02356
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
EOL1
Description:
ETO1-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 276015543 | 276022279 | - | Ag2G02356 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.77 | 100,956.10 Da | 49.49 | 89.58 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13181 | Tetratricopeptide repeat | 711 | 739 | 0.02 | IPR019734 |
| SUPERFAMILY | SSF48452 | TPR-like | 378 | 504 | 1.14E-7 | IPR011990 |
| SUPERFAMILY | SSF54695 | POZ domain | 177 | 276 | 3.06E-8 | IPR011333 |
| SUPERFAMILY | SSF48452 | TPR-like | 694 | 878 | 5.5E-16 | IPR011990 |
| SUPERFAMILY | SSF48452 | TPR-like | 478 | 739 | 2.46E-13 | IPR011990 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 175 | 319 | 5.2E-14 | IPR011333 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 364 | 547 | 4.1E-10 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 792 | 886 | 7.2E-8 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 597 | 791 | 1.2E-13 | IPR011990 |
| SMART | SM00028 | tpr_5 | 510 | 543 | 350.0 | IPR019734 |
| SMART | SM00028 | tpr_5 | 381 | 414 | 55.0 | IPR019734 |
| SMART | SM00028 | tpr_5 | 839 | 872 | 12.0 | IPR019734 |
| SMART | SM00225 | BTB_4 | 180 | 280 | 3.0E-4 | IPR000210 |
| SMART | SM00028 | tpr_5 | 710 | 743 | 0.0085 | IPR019734 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 710 | 743 | 8.6144 | IPR019734 |
| Coils | Coil | Coil | 755 | 789 | - | - |
| Coils | Coil | Coil | 390 | 410 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G02680.1 | ETO1-like 1. Encodes a paralog of ETO1, which is a negative regulator of ACS5 (a key enzyme in ethylene biosynthesis pathway). EOL1 also interacts with and inhibits the activity of ACS5. | 0 |
| RefSeq | XP_017252771.1 | PREDICTED: ETO1-like protein 1 [Daucus carota subsp. sativus] | 0 |
| Q9ZQX6 | ETO1-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=EOL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A161XTY9 | BTB domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_018438 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 24.879337 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 17.829866 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 18.506748 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 18.252333 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 17.317543 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 14.673079 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 13.800143 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 12.393332 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 42.818008 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 37.277218 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 46.562027 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 42.976864 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 41.94199 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 37.684536 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 28.861675 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 27.159492 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 34.064541 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 35.776707 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 24.076424 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 32.103531 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 33.784046 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 31.143473 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 29.784473 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 27.848118 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 29.794359 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 36.279373 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 36.340969 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 32.428482 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 38.45052 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 10.305718 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 12.079852 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 9.703628 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 15.3996 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 14.400441 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 14.479164 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 10.141328 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 4.537173 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 7.669168 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 22.612951 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 19.826424 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 15.359297 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 22.604336 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 23.008562 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 21.07832 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 23.310474 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 21.672117 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 25.642611 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 22.909994 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 24.338512 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 24.872904 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg35349, jg8758 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13536 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000317 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g119930 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg31681, Sbi_jg57622 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25313 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00025822 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl54247, Sgl59593 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000007366, gene:ENSEOMG00000022842 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0025270, CQ.Regalona.r1.5BG0026820 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30026680 |
| Apiaceae | Apium graveolens | 1 | Ag2G02356 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G001440, COCNU_06G015400 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103722732, gene-LOC103724119 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.546.V1.1, AsparagusV1_08.1921.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri12G10761 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G02680.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028410m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g02600.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g039620.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G2076 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G2185 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g13230 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g15100 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1135 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00024710 |
| Poaceae | Echinochloa crus-galli | 3 | AH04.1776, BH04.1809, CH04.2036 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_7AG0557820, gene-QOZ80_7BG0588900 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0209580.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_042807, gene-QYE76_066422 |
| Poaceae | Oryza coarctata | 4 | Oco13G002520, Oco14G002740, Oco21G007750, Oco22G008950 |
| Poaceae | Oryza sativa | 2 | LOC_Os07g08120.2, LOC_Os11g37520.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G051300, gene-BS78_K092100 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0103178, Pt_Chr0303676, Pt_Chr0700232, Pt_Chr0700421 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr07G015690, Chr16G005370, Chr17G004720, Chr19G017220 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G963700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG077360, gene_TRIDC2BG085900 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G591300.1, TraesCS2B02G592500.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb114430_P002, Zm00001eb200590_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-35668, nbis-gene-43070, nbis-gene-46179 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g18131, Zma_g19007, Zma_g4810 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG01.2841 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g02170 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.1029 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-11322 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10702 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10357 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.330 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013730 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9958 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-19737, nbisL1-mrna-24776 |
| Salicaceae | Populus euphratica | 1 | populus_peu32750 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132610789 |
| Solanaceae | Solanum chilense | 1 | SOLCI007322600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031124 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.16845_chr09_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G2638 |
| Zosteraceae | Zostera marina | 1 | Zosma05g28550.v3.1 |