Basic Information
Locus ID:
Ag2G02351
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Vps23 core domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 275195587 | 275197005 | - | Ag2G02351 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.22 | 37,247.07 Da | 50.49 | 92.66 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05743 | UEV domain | 34 | 151 | 5.6E-22 | IPR008883 |
| Pfam | PF09454 | Vps23 core domain | 258 | 321 | 4.7E-20 | IPR017916 |
| SUPERFAMILY | SSF140111 | Endosomal sorting complex assembly domain | 268 | 322 | 3.27E-14 | IPR037202 |
| SUPERFAMILY | SSF54495 | UBC-like | 28 | 154 | 2.15E-18 | IPR016135 |
| Gene3D | G3DSA:6.10.140.820 | - | 267 | 324 | 2.6E-18 | - |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 5 | 155 | 1.6E-31 | IPR016135 |
| ProSiteProfiles | PS51312 | Steadiness box (SB) domain profile. | 264 | 327 | 10.956316 | IPR017916 |
| ProSiteProfiles | PS51322 | UEV domain profile. | 14 | 156 | 30.078495 | IPR008883 |
| Coils | Coil | Coil | 215 | 235 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G38830.1 | Ubiquitin-conjugating enzyme/RWD-like protein. | 0 |
| RefSeq | XP_017251982.1 | PREDICTED: protein ELC [Daucus carota subsp. sativus] | 0 |
| Q9LHG8 | Protein ELC OS=Arabidopsis thaliana OX=3702 GN=ELC PE=1 SV=1 | 0 | |
| TrEMBL | A0A162A4H5 | GB1/RHD3-type G domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_018442 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.665845 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 1.122904 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 1.640295 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 3.297529 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 2.491186 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1.919813 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.920469 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.2471 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0.192325 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0.581705 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0.242847 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0.581221 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0.898637 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0.940443 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.619205 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.692185 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 3.525306 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 5.276466 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 3.309017 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 3.401593 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 7.233641 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 6.005023 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 6.484277 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 6.566918 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 5.612503 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 8.019242 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 9.45325 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 8.289843 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 8.771845 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.986216 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.838821 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.647499 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 23.483948 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 11.815103 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 22.216358 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 28.768494 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 3.314767 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 15.370966 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.133849 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 1.771556 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.511036 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 3.289806 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 2.513785 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 13.568697 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 11.57317 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 2.946461 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 9.282195 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0.308743 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0.355621 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0.041869 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg34211, jg35366, jg8738, jg9955 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8515 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah000284, Ah033340 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_2g039010, BVRB_5g120210 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg13966, Sbi_jg31578, Sbi_jg51972, Sbi_jg57710 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg25363, Seu_jg9884 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00004332, GOSA_00019472 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl53128, Sgl54290, Sgl58403, Sgl59635 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000012632, gene:ENSEOMG00000021540 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.2AG0008400, CQ.Regalona.r1.2BG0009390 ... |
| Apiaceae | Apium graveolens | 2 | Ag2G02351, Ag9G01358 |
| Arecaceae | Cocos nucifera | 5 | COCNU_02G004120, COCNU_03G011380, COCNU_06G005020 ... |
| Arecaceae | Phoenix dactylifera | 5 | gene-LOC103701497, gene-LOC103702512, gene-LOC103711187 ... |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2003.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri10G07258, Ftri11G17032, Ftri15G12635 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT2G38830.1, AT3G12400.1, AT5G13860.1 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10000683m.g.v1.0, Thhalv10013854m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp3g10590.v2.2, Sp4g21220.v2.2, Sp6g30140.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB01g006270.2N, BniB01g052580.2N, BniB01g052590.2N ... |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno06g12970, gene.Cymno14g03030 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0148s00008.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g20740, gene.Thate06g14770 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-3707, nbisL1-mrna-6327 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.2029, evm.TU.LG04.1169 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00007925, Pov_00038753 |
| Poaceae | Echinochloa crus-galli | 7 | AH05.538, AH07.4062, BH05.589, BH07.1404, CH05.673 ... |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_2AG0110050, gene-QOZ80_2AG0151780 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0504530.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_049826, gene-QYE76_050092 |
| Poaceae | Oryza coarctata | 1 | Oco03G026410 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g58640.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G331400, gene-BS78_08G050600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0703925, Pt_Chr0703928 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr06G026820, Chr13G000030, Chr15G000040 |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G570700, Tel5E01G732600 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC5AG052080, gene_TRIDC5AG066390 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS5A02G356400.1.cds1, TraesCS5A02G463000.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb259630_P001, Zm00001eb409970_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-34497, nbis-gene-39724 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g17494, Zma_g24935 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1829, evm.TU.LG11.1189 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g02520, gene.Posoc06g01880 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.123, evm.TU.Scaffold_5_RagTag.1047 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-11306, nbisL1-mrna-7214 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-570 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-10342, nbisL1-mrna-14458 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000005l.127, add.evm.TU.utg000006l.127 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00010175, Maker00013074 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16893 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22002 |
| Salicaceae | Populus euphratica | 4 | populus_peu04188, populus_peu04189, populus_peu32775 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132606964, gene-LOC132608240, gene-LOC132610685 |
| Solanaceae | Solanum chilense | 3 | SOLCI000876200, SOLCI001025000, SOLCI005544800 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107029447, gene-LOC107030398, gene-LOC107031997 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.29058_chr11_-, gene_14778 |
| Tamaricaceae | Tamarix chinensis | 3 | TC01G4279, TC06G0218, TC07G1886 |
| Zosteraceae | Zostera marina | 2 | Zosma01g38170.v3.1, Zosma04g00070.v3.1 |