halophFGD

Basic Information

Locus ID: Ag2G02343

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr2	274370214	274372524	-	Ag2G02343

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.91	29,451.33 Da	33.13	77.58	-0.52

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF02309	AUX/IAA family	18	256	1.1E-79	IPR033389
SUPERFAMILY	SSF54277	CAD & PB1 domains	147	246	3.2E-21	-
Gene3D	G3DSA:3.10.20.90	-	143	258	1.6E-40	-
ProSiteProfiles	PS51745	PB1 domain profile.	147	247	22.381485	IPR000270

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K14484 (auxin-responsive protein IAA)

Pathway:

ko04075 (Plant hormone signal transduction) map04075 (Plant hormone signal transduction)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G04730.1	indoleacetic acid-induced protein 16. early auxin-induced (IAA16)
RefSeq	XP_017249402.1	PREDICTED: auxin-responsive protein IAA16-like [Daucus carota subsp. sativus]
Swiss-Prot	P13089	Auxin-induced protein AUX28 OS=Glycine max OX=3847 GN=AUX28 PE=2 SV=1
TrEMBL	A0A161XTZ6	Auxin-responsive protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_018448 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	4.387992	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	4.229545	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	4.145442	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	4.23875	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	3.886651	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	1.140805	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.523167	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.220679	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	17.142704	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	14.582462	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	18.139202	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	30.147747	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	21.726225	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	25.872705	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	127.726791	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	74.221947	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	53.490326	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	111.24868	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	81.35717	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	154.81781	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	89.897522	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	42.874249	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	55.093685	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	39.985634	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	63.804722	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	34.905209	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	84.39444	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	43.436668	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	77.653755	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	78.257065		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	139.44574		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	112.900459		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	4.347332		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	5.141266		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	1.589871		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	10.020055		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	17.44462		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	15.439226		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	134.54715	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	67.674133	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	25.033257	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	3.791003	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	20.527643	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	79.022797	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	67.992363	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	1.893155	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	190.816528	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	35.186985	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	10.920936	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	14.47047	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg11124, jg12644, jg27827, jg35374, jg37839
Aizoaceae	Mesembryanthemum crystallinum	3	gene_10080, gene_13522, gene_26164
Amaranthaceae	Atriplex hortensis	5	Ah000272, Ah002353, Ah006130, Ah010686, Ah010689
Amaranthaceae	Beta vulgaris	3	BVRB_4g082260, BVRB_5g120320, BVRB_9g220380
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg11486, Sbi_jg16808, Sbi_jg31549, Sbi_jg46417 ... Sbi_jg57732, Sbi_jg61331
Amaranthaceae	Salicornia europaea	3	Seu_jg20737, Seu_jg23056, Seu_jg25378
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00005252, GOSA_00008210, GOSA_00019482
Amaranthaceae	Suaeda glauca	6	Sgl24837, Sgl29983, Sgl54307, Sgl55866, Sgl59651, Sgl61177
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000007236, gene:ENSEOMG00000009301 ... gene:ENSEOMG00000016268, gene:ENSEOMG00000022044, gene:ENSEOMG00000026426, gene:ENSEOMG00000028312, gene:ENSEOMG00000038928, gene:ENSEOMG00000041243, gene:ENSEOMG00000052305
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.4AG0010570, CQ.Regalona.r1.4BG0010780 ... CQ.Regalona.r1.5AG0025620, CQ.Regalona.r1.5BG0027140, CQ.Regalona.r1.7BG0010680, CQ.Regalona.r1.9AG0013930
Anacardiaceae	Pistacia vera	4	pistato.v30026330, pistato.v30126730, pistato.v30184390 ... pistato.v30235710
Apiaceae	Apium graveolens	6	Ag10G00701, Ag1G01812, Ag2G02343, Ag6G01457, Ag8G01539 ... Ag9G01735
Arecaceae	Cocos nucifera	5	COCNU_03G001830, COCNU_06G000680, COCNU_06G015060 ... COCNU_14G000940, COCNU_14G011810
Arecaceae	Phoenix dactylifera	4	gene-LOC103705980, gene-LOC103721655, gene-LOC103722711 ... gene-LOC120105940
Asparagaceae	Asparagus officinalis	1	AsparagusV1_07.3214.V1.1
Asteraceae	Flaveria trinervia	3	Ftri14G31326, Ftri9G33260, FtriNA08258
Brassicaceae	Arabidopsis thaliana	4	AT1G04250.1, AT3G04730.1, AT3G23050.1, AT4G14550.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10008679m.g.v1.0, Thhalv10021428m.g.v1.0 ... Thhalv10021441m.g.v1.0, Thhalv10026031m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g03060.v2.2, Sp3g03580.v2.2, Sp3g20720.v2.2 ... Sp7g12640.v2.2
Brassicaceae	Brassica nigra	9	BniB01g039200.2N, BniB01g058840.2N, BniB02g001610.2N ... BniB03g000750.2N, BniB03g024990.2N, BniB06g046620.2N, BniB07g020120.2N, BniB07g048860.2N, BniB07g062090.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq06G0708, Ceq06G1393, Ceq06G2378, Ceq07G0381
Casuarinaceae	Casuarina glauca	4	Cgl06G0730, Cgl06G1456, Cgl06G2502, Cgl07G0393
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno01g01280, gene.Cymno06g02130, gene.Cymno06g12860
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g40890, gene.Thate02g40990
Malvaceae	Hibiscus hamabo Siebold & Zucc.	4	nbisL1-mrna-5002, nbisL1-mrna-6331, nbisL1-mrna-6333 ... nbisL1-mrna-7868
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG03.2256, evm.TU.LG04.1192, evm.TU.LG11.907
Plantaginaceae	Plantago ovata	3	Pov_00007915, Pov_00018007, Pov_00024671
Plumbaginaceae	Limonium bicolor	5	Lb1G06946, Lb1G07951, Lb2G10315, Lb3G18377, Lb3G18983
Poaceae	Echinochloa crus-galli	16	AH01.1210, AH05.3968, AH05.581, AH06.1662, BH01.1513 ... BH01.789, BH05.4060, BH05.628, BH06.1603, CH01.1438, CH01.785, CH01.787, CH05.4270, CH05.724, CH06.1760, Contig309.126
Poaceae	Eleusine coracana subsp. coracana	11	gene-QOZ80_1AG0000810, gene-QOZ80_3AG0216690 ... gene-QOZ80_3AG0225050, gene-QOZ80_3BG0261960, gene-QOZ80_3BG0270310, gene-QOZ80_5AG0396890, gene-QOZ80_5AG0400970, gene-QOZ80_5BG0445380, gene-QOZ80_5BG0449560, gene-QOZ80_6AG0530850, gene-QOZ80_6BG0484690
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.5HG0433470.1, HORVU.MOREX.r3.5HG0509120.1 ... HORVU.MOREX.r3.5HG0509730.1, HORVU.MOREX.r3.5HG0509760.1, HORVU.MOREX.r3.7HG0711230.1
Poaceae	Lolium multiflorum	4	gene-QYE76_000687, gene-QYE76_010490, gene-QYE76_035400 ... gene-QYE76_062927
Poaceae	Oryza coarctata	7	Oco01G005800, Oco02G005890, Oco06G019310, Oco06G024120 ... Oco12G009730, Oco23G009900, Oco24G009580
Poaceae	Oryza sativa	6	LOC_Os01g13030.1, LOC_Os03g43400.1, LOC_Os03g53150.1 ... LOC_Os05g14180.1, LOC_Os06g22870.1, LOC_Os12g40890.1
Poaceae	Paspalum vaginatum	4	gene-BS78_01G085300, gene-BS78_01G148800, gene-BS78_K179600 ... gene-BS78_08G135700
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0100429, Pt_Chr0104448, Pt_Chr0107106, Pt_Chr0501467 ... Pt_Chr0704300
Poaceae	Sporobolus alterniflorus	12	Chr01G005580, Chr01G010970, Chr04G028360, Chr07G027310 ... Chr12G025960, Chr12G037930, Chr14G017350, Chr18G004990, Chr19G008040, Chr21G011790, Chr22G012400, Chr27G008620
Poaceae	Thinopyrum elongatum	5	Tel3E01G273600, Tel5E01G125800, Tel5E01G602200 ... Tel5E01G609500, Tel7E01G583200
Poaceae	Triticum dicoccoides	9	gene_TRIDC3AG020910, gene_TRIDC3BG031190 ... gene_TRIDC5AG008920, gene_TRIDC5AG055320, gene_TRIDC5AG055920, gene_TRIDC5BG009670, gene_TRIDC5BG059920, gene_TRIDC7AG047560, gene_TRIDC7BG040020
Poaceae	Triticum aestivum	15	TraesCS3A02G155200.1, TraesCS3B02G181500.1 ... TraesCS3D02G162700.1, TraesCS5A02G058600.1, TraesCS5A02G378300.2, TraesCS5A02G382600.1, TraesCS5B02G058500.1, TraesCS5B02G381900.1, TraesCS5B02G386800.1, TraesCS5D02G069300.1, TraesCS5D02G388300.2, TraesCS5D02G392000.1, TraesCS7A02G331100.1, TraesCS7B02G242800.1, TraesCS7D02G339300.1
Poaceae	Zea mays	4	Zm00001eb056870_P001, Zm00001eb135550_P001 ... Zm00001eb215120_P001, Zm00001eb350370_P005
Poaceae	Zoysia japonica	7	nbis-gene-15030, nbis-gene-16112, nbis-gene-24271 ... nbis-gene-35452, nbis-gene-44587, nbis-gene-47576, nbis-gene-47901
Poaceae	Zoysia macrostachya	8	Zma_g25292, Zma_g26085, Zma_g27888, Zma_g2824, Zma_g30120 ... Zma_g32319, Zma_g503, Zma_g9503
Portulacaceae	Portulaca oleracea	10	evm.TU.LG01.2868, evm.TU.LG02.1145, evm.TU.LG07.1722 ... evm.TU.LG08.524, evm.TU.LG09.828, evm.TU.LG11.550, evm.TU.LG15.1484, evm.TU.LG16.1241, evm.TU.LG20.1258, evm.TU.LG22.1553
Posidoniaceae	Posidonia oceanica	1	gene.Posoc03g02690
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_18_RagTag.468, evm.TU.Scaffold_1_RagTag.281 ... evm.TU.Scaffold_2_RagTag.1943, evm.TU.Scaffold_6_RagTag.817, evm.TU.Scaffold_9_RagTag.954
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-1554, nbisL1-mrna-15869, nbisL1-mrna-21246 ... nbisL1-mrna-3360, nbisL1-mrna-7919
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-10099, nbisL1-mrna-10705, nbisL1-mrna-18117 ... nbisL1-mrna-7608
Rhizophoraceae	Ceriops zippeliana	5	nbisL1-mrna-13778, nbisL1-mrna-18353, nbisL1-mrna-5339 ... nbisL1-mrna-693, nbisL1-mrna-7892
Rhizophoraceae	Kandelia candel	5	evm.TU.utg000003l.493, evm.TU.utg000009l.124 ... evm.TU.utg000011l.505, evm.TU.utg000012l.190, evm.TU.utg000023l.172
Rhizophoraceae	Kandelia obovata	5	Maker00005777, Maker00007555, Maker00009251, Maker00011225 ... Maker00018742
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-12914, nbisL1-mrna-1477, nbisL1-mrna-15255 ... nbisL1-mrna-7311, nbisL1-mrna-7770
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-16248, nbisL1-mrna-256, nbisL1-mrna-4224 ... nbisL1-mrna-5093
Salicaceae	Populus euphratica	9	populus_peu02797, populus_peu02804, populus_peu07468 ... populus_peu13586, populus_peu15127, populus_peu15928, populus_peu21481, populus_peu32790, populus_peu33621
Solanaceae	Lycium barbarum	6	gene-LOC132598496, gene-LOC132605635, gene-LOC132610770 ... gene-LOC132633355, gene-LOC132642624, gene-LOC132645298
Solanaceae	Solanum chilense	3	SOLCI001357900, SOLCI001391400, SOLCI002322500
Solanaceae	Solanum pennellii	5	gene-LOC107008367, gene-LOC107012644, gene-LOC107021546 ... gene-LOC107022057, gene-LOC107031695
Tamaricaceae	Reaumuria soongarica	2	STRG.17638_chr09_-, STRG.28466_chr04_-
Tamaricaceae	Tamarix chinensis	4	TC02G3469, TC05G1184, TC07G2315, TC12G1301
Zosteraceae	Zostera marina	1	Zosma06g24040.v3.1